RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SERF1AO75920 110 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 NEURL1O76050 574 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 GATA2P23769 480 aaPredicted RBP10.3□□□□□ -0.76
LDLR-205ENST00000557933 IER3P46695 156 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 FABP6P51161 128 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 RAB4BP61018 213 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 IL11RAQ14626 422 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 ZNF497Q6ZNH5 498 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 Q6ZWC4 215 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 NHLRC2Q8NBF2 726 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 PYGO2Q9BRQ0 406 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 ARRDC1-AS1Q9H2J1 176 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 PARD6AQ9NPB6 346 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 PCSK5Q92824 1860 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 PCNX2A6NKB5 2137 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 HPRT1P00492 218 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 MPV17P39210 176 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 MOB3BQ86TA1 216 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 OR2M7Q8NG81 312 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 OCC1Q8TAD7 63 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 NINJ1Q92982 152 aa10.3□□□□□ -0.76
LDLR-205ENST00000557933 RYDENQ9NUL5 291 aaKnown RBP10.3□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A10PA6NDY2 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A18PA6NE21 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A16PA6NEW6 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A20PA6NIJ5 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A8PA6NJQ4 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A7PA6NKC0 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A22PA8MWA6 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A12PA8MX19 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A5PA8MXJ8 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A23PA8MXZ1 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.29□□□□□ -0.76
LDLR-205ENST00000557933 HAND1O96004 215 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A15PP0C7V4 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A13PP0C7W8 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A14PP0C7W9 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 FAM90A24PP0C7X0 464 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 KRTDAPP60985 99 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 ARG2P78540 354 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 ZNF90Q03938 601 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 RPL39P5Q59GN2 51 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 HES3Q5TGS1 186 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 OR13A1Q8NGR1 328 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 SLC25A40Q8TBP6 338 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 RNASEH2CQ8TDP1 164 aaKnown RBP10.29□□□□□ -0.76
LDLR-205ENST00000557933 GALMQ96C23 342 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 TECTBQ96PL2 329 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 DIRC2Q96SL1 478 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 TP53TG3Q9ULZ0 132 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 YLPM1P49750 1951 aaKnown RBP10.29□□□□□ -0.76
LDLR-205ENST00000557933 INTS1Q8N201 2190 aaKnown RBP10.29□□□□□ -0.76
LDLR-205ENST00000557933 MARCH11A6NNE9 402 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 PMS2P5A8MQ11 134 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 J3QT63 122 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 CA1P00915 261 aaPredicted RBP10.29□□□□□ -0.76
LDLR-205ENST00000557933 KCNIP4Q6PIL6 250 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 ERASQ7Z444 233 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 TMEM251Q8N6I4 163 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 CMTM2Q8TAZ6 248 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 NOL4LQ96MY1 436 aaPredicted RBP10.29□□□□□ -0.76
LDLR-205ENST00000557933 TTTY12Q9BZ98 90 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 ZNF703Q9H7S9 590 aaPredicted RBP10.29□□□□□ -0.76
LDLR-205ENST00000557933 SEPSECSQ9HD40 501 aaKnown RBP10.29□□□□□ -0.76
LDLR-205ENST00000557933 HEYLQ9NQ87 328 aaPredicted RBP10.29□□□□□ -0.76
LDLR-205ENST00000557933 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.29□□□□□ -0.76
LDLR-205ENST00000557933 HSPB7Q9UBY9 170 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 TP73-AS1Q9UF72 201 aa10.29□□□□□ -0.76
LDLR-205ENST00000557933 F6UZH7 168 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 TMEM250H0YL14 139 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 M0R143 59 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 GCGP01275 180 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 WNT2P09544 360 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 KITLGP21583 273 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 OR1C1Q15619 314 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 SAMD10Q9BYL1 202 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 RIF1Q5UIP0 2472 aaKnown RBP10.28□□□□□ -0.76
LDLR-205ENST00000557933 ZZEF1O43149 2961 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 MDFIC2A0A1B0GVS7 189 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 LNP1A1A4G5 178 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 AHRRA9YTQ3 701 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 SH2D1BO14796 132 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 GGCTO75223 188 aaKnown RBP10.28□□□□□ -0.76
LDLR-205ENST00000557933 PMCHP20382 165 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 TDGF1P3P51864 188 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 LINC00310P59036 64 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 RPL15P61313 204 aaKnown RBP10.28□□□□□ -0.76
LDLR-205ENST00000557933 KRTCAP3Q53RY4 240 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 LHFPL4Q7Z7J7 247 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 BAGE3Q86Y29 109 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 BAGE2Q86Y30 109 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 DOLPP1Q86YN1 238 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 SFRP2Q96HF1 295 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 RIMS4Q9H426 269 aaPredicted RBP10.28□□□□□ -0.76
LDLR-205ENST00000557933 KCNIP1Q9NZI2 227 aa10.28□□□□□ -0.76
LDLR-205ENST00000557933 YTHDF2Q9Y5A9 579 aaKnown RBP10.28□□□□□ -0.76
LDLR-205ENST00000557933 TET2Q6N021 2002 aaPredicted RBP10.28□□□□□ -0.76
LDLR-205ENST00000557933 C15orf62A8K5M9 175 aa10.27□□□□□ -0.76
LDLR-205ENST00000557933 CD1BP29016 333 aa10.27□□□□□ -0.76
LDLR-205ENST00000557933 TIMP3P35625 211 aa10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms