RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SAA1P0DJI8 122 aaPredicted RBP8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 RRASP10301 218 aa8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 HRH1P35367 487 aa8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 UBE2KP61086 200 aa8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 CBX3Q13185 183 aa8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 PRSS8Q16651 343 aa8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 C10orf55Q5SWW7 151 aa8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 OVCH2Q7RTZ1 564 aa8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 ZNF430Q9H8G1 570 aaPredicted RBP8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 SMIM31A0A1B0GVY4 71 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 MSGN1A6NI15 193 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 SULT1C2O00338 296 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 SLC22A5O76082 557 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 MYOD1P15172 320 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 GNRHRP30968 328 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 DYRK1AQ13627 763 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 TNXAQ16473 311 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 VMA21Q3ZAQ7 101 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 AKIRIN2Q53H80 203 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 MZT2AQ6P582 158 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 DHRS11Q6UWP2 260 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 ZNF818PQ6ZRF7 136 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 TEX45Q8NA69 505 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 OR5H2Q8NGV7 314 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 OSR1Q8TAX0 266 aaPredicted RBP8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 UBE2E2Q96LR5 201 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 CMTM3Q96MX0 182 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 HSD17B10Q99714 261 aaKnown RBP8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 ZNF2Q9BSG1 426 aaPredicted RBP8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 VSIG4Q9Y279 399 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 PRELID3BQ9Y3B1 194 aa8.98□□□□□ -0.97
CCDC88C-208ENST00000554165 M0QYG6 137 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 RBMXL2O75526 392 aaKnown RBP8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 RPL5P46777 297 aaKnown RBP8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 HERV-K104P61576 105 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 TMEM267Q0VDI3 215 aaPredicted RBP8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 ZNF66Q6ZN08 573 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 C19orf35Q6ZS72 473 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 SSX9Q7RTT3 188 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 LAX1Q8IWV1 398 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 SPAG16Q8N0X2 631 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 OR11H1Q8NG94 326 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 OR1N2Q8NGR9 330 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 OR51H1Q8NH63 302 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 OR52I2Q8NH67 350 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 DYNC2LI1Q8TCX1 351 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 RCC1LQ96I51 464 aaKnown RBP8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 ABHD1Q96SE0 405 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 FXYD6Q9H0Q3 95 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 ZNF355PQ9NSJ1 428 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 AURKAIP1Q9NWT8 199 aaPredicted RBP8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 EXTL2Q9UBQ6 330 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 KLK11Q9UBX7 282 aa8.97□□□□□ -0.97
CCDC88C-208ENST00000554165 A0A1B0GW64 132 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 E7EUB6 86 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 PRH1P02810 166 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 TRGV3P03979 118 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 RPA2P15927 270 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 SLC6A1P30531 599 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 SLURP1P55000 103 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 TPPP2P59282 170 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 TAS2R46P59540 309 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 FHL3Q13643 280 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 TCTEX1D1Q8N7M0 179 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 OR4S2Q8NH73 311 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 SRSF12Q8WXF0 261 aaKnown RBP8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 AP3S1Q92572 193 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 MOB3AQ96BX8 217 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 SCPEP1Q9HB40 452 aa8.96□□□□□ -0.98
CCDC88C-208ENST00000554165 IGHV4OR15-8A0A075B7B6 117 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 A0A087WW49 117 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 TRAV3A0A0B4J244 114 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 WI2-2373I1.2A0A1W2PRP0 233 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 HMX3A6NHT5 357 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 H3BMQ9 156 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 RGS5O15539 181 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 PGLYRP1O75594 196 aaPredicted RBP8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 RCVRNP35243 200 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 TMBIM6P55061 237 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 DGCR2P98153 550 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 RUNX1Q01196 453 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 MSMO1Q15800 293 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 PHLDA2Q53GA4 152 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 AADACL3Q5VUY0 350 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 PUSL1Q8N0Z8 303 aaKnown RBP8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 POC5Q8NA72 575 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 OR5M8Q8NGP6 311 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 RAB2BQ8WUD1 216 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 ISOC1Q96CN7 298 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 RHOVQ96L33 236 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 PHB2Q99623 299 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 ADAM30Q9UKF2 790 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 CEPT1Q9Y6K0 416 aa8.95□□□□□ -0.98
CCDC88C-208ENST00000554165 K7EIL1 84 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 KBTBD11O94819 623 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 OR2A4O95047 310 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 S1PR2O95136 353 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 CD3DP04234 171 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 RLN1P04808 185 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 IL6RP08887 468 aaPredicted RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms