RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	UQCR10	Q9UDW1	63 aa		9.84	□□□□□ -0.83
SYNE2-208	ENST00000553289	PTPRF	P10586	1907 aa		9.84	□□□□□ -0.83
SYNE2-208	ENST00000553289		A0A0G2JK05	382 aa		9.84	□□□□□ -0.84
SYNE2-208	ENST00000553289	LOC389332	A0A1B0GUA5	103 aa		9.84	□□□□□ -0.84
SYNE2-208	ENST00000553289	TM4SF5	O14894	197 aa		9.84	□□□□□ -0.84
SYNE2-208	ENST00000553289	NAT1	P18440	290 aa		9.84	□□□□□ -0.84
SYNE2-208	ENST00000553289	CDX1	P47902	265 aa	Predicted RBP	9.84	□□□□□ -0.84
SYNE2-208	ENST00000553289	GFRA1	P56159	465 aa		9.84	□□□□□ -0.84
SYNE2-208	ENST00000553289	ZCCHC14	Q8WYQ9	949 aa	Known RBP	9.84	□□□□□ -0.84
SYNE2-208	ENST00000553289	NABP2	Q9BQ15	211 aa		9.84	□□□□□ -0.84
SYNE2-208	ENST00000553289	PIMREG	Q9BSJ6	248 aa		9.84	□□□□□ -0.84
SYNE2-208	ENST00000553289	PARL	Q9H300	379 aa		9.84	□□□□□ -0.84
SYNE2-208	ENST00000553289	SEC16A	O15027	2179 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	PF4V1	P10720	104 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	NMU	P48645	174 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	FAM106A	Q4KMX7	169 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	TCF24	Q7RTU0	167 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	RARRES2	Q99969	163 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	RALY	Q9UKM9	306 aa	Known RBP	9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	OR4C46	A6NHA9	309 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	FCGR2B	P31994	310 aa	Predicted RBP	9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	REL	Q04864	619 aa	Predicted RBP	9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	OSR1	Q8TAX0	266 aa	Predicted RBP	9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	SH3BGRL3	Q9H299	93 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	IGHV1-69-2	A0A0G2JMI3	117 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	NPIPB11	E5RHQ5	1161 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	SPATA45	Q537H7	98 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	FAM90A1	Q86YD7	464 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	SBF2	Q86WG5	1849 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	FOLR2	P14207	255 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	COX6B1	P14854	86 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	BTF3	P20290	206 aa	Known RBP	9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	MDK	P21741	143 aa	Predicted RBP	9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	UCP1	P25874	307 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	GCHFR	P30047	84 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	LAMTOR1	Q6IAA8	161 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	FADS6	Q8N9I5	356 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	HIST1H2BA	Q96A08	127 aa		9.83	□□□□□ -0.84
SYNE2-208	ENST00000553289	ARID2	Q68CP9	1835 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	LOC105371242	A0A075B767	164 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	TGIF2-C20orf24	A0A0A6YYL0	155 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	COX6C	P09669	75 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	CRYBA2	P53672	197 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	GDF15	Q99988	308 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	C1QTNF5	Q9BXJ0	243 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	ANOS1	P23352	680 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	SFRP2	Q96HF1	295 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	MIEN1	Q9BRT3	115 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	CARHSP1	Q9Y2V2	147 aa	Known RBP	9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	SHISA3	A0PJX4	238 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	TIAF1	O95411	115 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	PLAU	P00749	431 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	TRGC1	P0CF51	173 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	CRYBB3	P26998	211 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	FAM53A	Q6NSI3	398 aa	Predicted RBP	9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	ACP7	Q6ZNF0	438 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	IL17B	Q9UHF5	180 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	UNC13C	Q8NB66	2214 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289		A0A0B4J293	547 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	TSPO	P30536	169 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	TNFSF10	P50591	281 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	SAPCD1	Q5SSQ6	148 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	OR10AG1	Q8NH19	301 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	RAB37	Q96AX2	223 aa		9.82	□□□□□ -0.84
SYNE2-208	ENST00000553289	ATP5G2	Q06055	141 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	WDR25	Q64LD2	544 aa	Predicted RBP	9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	COPS9	Q8WXC6	57 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	EEF1AKMT3	Q96AZ1	226 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	GUCD1	Q96NT3	240 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	PMCHL2	Q9BQD1	86 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	FBLN5	Q9UBX5	448 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	LOC101059948	A0A1B0GTJ6	334 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	LCN2	P80188	198 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289		Q5BKY6	102 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	ZNF502	Q8TBZ5	544 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	PGLYRP4	Q96LB8	373 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	ELOVL1	Q9BW60	279 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	CX3CL1	P78423	397 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	ZNF385C	Q66K41	422 aa	Predicted RBP	9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	TMEM74B	Q9NUR3	256 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	FOXH1	O75593	365 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	C19orf54	Q5BKX5	351 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	PHLDA3	Q9Y5J5	127 aa		9.81	□□□□□ -0.84
SYNE2-208	ENST00000553289	CKAP5	Q14008	2032 aa		9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	IGFBP3	P17936	291 aa	Predicted RBP	9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	ZP1	P60852	638 aa		9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	OR10S1	Q8NGN2	331 aa		9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	CRX	O43186	299 aa	Predicted RBP	9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	HLA-DRB1	P01911	266 aa		9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	TGIF1	Q15583	401 aa		9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	SLC25A34	Q6PIV7	304 aa		9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	CYP2G1P	Q6ZSU1	146 aa		9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	SRSF12	Q8WXF0	261 aa	Known RBP	9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	DDB2	Q92466	427 aa		9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	FABP2	P12104	132 aa		9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	SRI	P30626	198 aa		9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	APOBEC3A	P31941	199 aa	Predicted RBP	9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	GPX4	P36969	197 aa	Predicted RBP	9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	PDLIM4	P50479	330 aa		9.8	□□□□□ -0.84
SYNE2-208	ENST00000553289	SMUG1	Q53HV7	270 aa		9.8	□□□□□ -0.84

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