RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 GID8Q9NWU2 228 aa3.35□□□□□ -1.87
SCFD1-208ENST00000553278 PIK3C2GO75747 1445 aa3.35□□□□□ -1.87
SCFD1-208ENST00000553278 LST1O00453 97 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 FAAHO00519 579 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 HLA-DRB1P01911 266 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 SERPINA7P05543 415 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 CD5P06127 495 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 FABP1P07148 127 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 CRYBB3P26998 211 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 RPS11P62280 158 aaKnown RBP eCLIP3.34□□□□□ -1.87
SCFD1-208ENST00000553278 POU6F1Q14863 301 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 GRK1Q15835 563 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 KCNJ8Q15842 424 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 SNCBQ16143 134 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 TEX36Q5VZQ5 186 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 OOSP2Q86WS3 158 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 GPHB5Q86YW7 130 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 SLC35F6Q8N357 371 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 ZNF664Q8N3J9 261 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 ANKRD29Q8N6D5 301 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 OR51A2Q8NGJ7 313 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 SGMS2Q8NHU3 365 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 ZNF2Q9BSG1 426 aaPredicted RBP3.34□□□□□ -1.87
SCFD1-208ENST00000553278 COMMD5Q9GZQ3 224 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 OPTCQ9UBM4 332 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 VPREB3Q9UKI3 123 aa3.34□□□□□ -1.87
SCFD1-208ENST00000553278 KLK5Q9Y337 293 aaPredicted RBP3.34□□□□□ -1.87
SCFD1-208ENST00000553278 MTUS2Q5JR59 1369 aa3.34□□□□□ -1.88
SCFD1-208ENST00000553278 ZNF638Q14966 1978 aaKnown RBP3.34□□□□□ -1.88
SCFD1-208ENST00000553278 ITGB4P16144 1822 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 FAM236DA0A1B0GTK5 79 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 hADV38S2A0JD32 116 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 GRIFINA4D1Z8 144 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 GGTLC3B5MD39 225 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 NDUFB2O95178 105 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 FAM236CP0DP71 79 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 RUNX1Q01196 453 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 FLI1Q01543 452 aaPredicted RBP3.33□□□□□ -1.88
SCFD1-208ENST00000553278 IL15RAQ13261 267 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 TNFAIP8L3Q5GJ75 292 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 OR8B12Q8NGG6 310 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 NEK7Q8TDX7 302 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 KLK6Q92876 244 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 KLF6Q99612 283 aaPredicted RBP3.33□□□□□ -1.88
SCFD1-208ENST00000553278 SMDT1Q9H4I9 107 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 ASF1BQ9NVP2 202 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 RSL24D1Q9UHA3 163 aaKnown RBP3.33□□□□□ -1.88
SCFD1-208ENST00000553278 PTPRJQ12913 1337 aa3.33□□□□□ -1.88
SCFD1-208ENST00000553278 DHX57Q6P158 1386 aaKnown RBP3.33□□□□□ -1.88
SCFD1-208ENST00000553278 TRAV26-2A0A0B4J265 109 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 FAM159BA6NKW6 160 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 A8MUN3 132 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 PGRMC1O00264 195 aaKnown RBP3.32□□□□□ -1.88
SCFD1-208ENST00000553278 CRYZL1O95825 349 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 OR4E1P0C645 316 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 GABRA2P47869 451 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 POLR2GP62487 172 aaKnown RBP eCLIP3.32□□□□□ -1.88
SCFD1-208ENST00000553278 SMARCD3Q6STE5 483 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 LYG2Q86SG7 212 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 C1orf64Q8NEQ6 169 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 RPS4Y2Q8TD47 263 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 LMX1AQ8TE12 382 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 CT55Q8WUE5 264 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 TMEM222Q9H0R3 208 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 CENPHQ9H3R5 247 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 C14orf105Q9NVL8 296 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 NLRC5Q86WI3 1866 aa3.32□□□□□ -1.88
SCFD1-208ENST00000553278 SPATA31E1Q6ZUB1 1445 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 A0A1B0GU33 70 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 OR11H12B2RN74 326 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 LY6HO94772 140 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 CRHBPP24387 322 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 LPAR6P43657 344 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 RPL27AP46776 148 aaKnown RBP3.31□□□□□ -1.88
SCFD1-208ENST00000553278 LGALS9BQ3B8N2 356 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 AMMECR1LQ6DCA0 310 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 LGALS9CQ6DKI2 356 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 NOXRED1Q6NXP6 359 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 ZNF322Q6U7Q0 402 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-208ENST00000553278 TBC1D19Q8N5T2 526 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 Q8NAQ8 132 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 OR10P1Q8NGE3 313 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 OR11H2Q8NH07 326 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 MUC7Q8TAX7 377 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 FAM172AQ8WUF8 416 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 DEDD2Q8WXF8 326 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 RNASE6Q93091 150 aaKnown RBP3.31□□□□□ -1.88
SCFD1-208ENST00000553278 NMNAT3Q96T66 252 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 NIPSNAP1Q9BPW8 284 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 TMEM147Q9BVK8 224 aa3.31□□□□□ -1.88
SCFD1-208ENST00000553278 NUP155O75694 1391 aa3.3□□□□□ -1.88
SCFD1-208ENST00000553278 TRBV20OR9-2A0A075B6H5 130 aa3.3□□□□□ -1.88
SCFD1-208ENST00000553278 A0A087WUU8 490 aa3.3□□□□□ -1.88
SCFD1-208ENST00000553278 IGHV3-73A0A0B4J1V6 119 aa3.3□□□□□ -1.88
SCFD1-208ENST00000553278 C17orf51A8MQB3 221 aa3.3□□□□□ -1.88
SCFD1-208ENST00000553278 PLA2G10O15496 165 aa3.3□□□□□ -1.88
SCFD1-208ENST00000553278 SYNGR2O43760 224 aa3.3□□□□□ -1.88
SCFD1-208ENST00000553278 KLRC4O43908 158 aa3.3□□□□□ -1.88
SCFD1-208ENST00000553278 ZNF705DP0CH99 300 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-208ENST00000553278 CCL3P10147 92 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms