RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 EIF2S3LQ2VIR3 472 aaKnown RBP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 MORN2Q502X0 79 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 PDLIM3Q53GG5 364 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 TIMM23BQ5SRD1 257 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 C19orf35Q6ZS72 473 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 MOB1BQ7L9L4 216 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 OR51G1Q8NGK1 321 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 OR10G4Q8NGN3 311 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 OR10G9Q8NGN4 311 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 OR10G7Q8NGN6 311 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 GNPNAT1Q96EK6 184 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 WFIKKN1Q96NZ8 548 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 CABLES2Q9BTV7 478 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 SAP30LQ9HAJ7 183 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 SORL1Q92673 2214 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 TRGV10A0A0A0MS01 117 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 TGIF2-C20orf24A0A0A6YYL0 155 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 A0A1W2PPV4 95 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 RNF212BA8MTL3 300 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 SRRM5B3KS81 715 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 MGST3O14880 152 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 SPINK4O60575 86 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 ZNF737O75373 536 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 TNFSF4P23510 183 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 CHRNA7P36544 502 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 BPIFB3P59826 476 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 GNB1P62873 340 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 RPL31P62899 125 aaKnown RBP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 ZNF726P1Q15940 193 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 CT45A1Q5HYN5 189 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 SLC35E4Q6ICL7 350 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 C16orf54Q6UWD8 224 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 TMEM108Q6UXF1 575 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 CT45A3Q8NHU0 189 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 TAF15Q92804 592 aaKnown RBP eCLIP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 HIST1H2BAQ96A08 127 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 SSX3Q99909 188 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 NIPSNAP3BQ9BS92 247 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 COL25A1Q9BXS0 654 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 ENY2Q9NPA8 101 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 MBNL3Q9NUK0 354 aaKnown RBP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 MBD3L4A6NDZ8 208 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 MBD3L3A6NE82 208 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 MBD3L5A6NJ08 208 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 CYB5BO43169 146 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 TOX4O94842 621 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 YIF1AO95070 293 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 IGKV1-16P04430 117 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 OR8U8P0C7N1 319 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 CCKARP32238 428 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 CD200P41217 278 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 LGALS4P56470 323 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 RAB5BP61020 215 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 HFEQ30201 348 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 RPP25LQ8N5L8 163 aaKnown RBP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 OR10W1Q8NGF6 305 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 MBD3L2Q8NHZ7 208 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-215ENST00000552823 NANPQ8TBE9 248 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 FAM57AQ8TBR7 257 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 ACY3Q96HD9 319 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 TMEM140Q9NV12 185 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 PRELID3BQ9Y3B1 194 aa4.63□□□□□ -1.67
LIMA1-215ENST00000552823 SAA2-SAA4A0A096LPE2 208 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 H3BTX0 84 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 SRP19P09132 144 aaKnown RBP4.62□□□□□ -1.67
LIMA1-215ENST00000552823 SAA2P0DJI9 122 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-215ENST00000552823 GZMHP20718 246 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 KITLGP21583 273 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 CHRNB4P30926 498 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 DUTP33316 252 aaKnown RBP4.62□□□□□ -1.67
LIMA1-215ENST00000552823 ICAM4Q14773 271 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 IGFL2Q6UWQ7 119 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 LINC00596Q86U02 117 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 KIR3DL3Q8N743 410 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 FAM216AQ8WUB2 273 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 RAB24Q969Q5 203 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 SNX22Q96L94 193 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 SGK494Q96LW2 274 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 SMIM7Q9BQ49 75 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 RPH3ALQ9UNE2 315 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 CARHSP1Q9Y2V2 147 aaKnown RBP4.62□□□□□ -1.67
LIMA1-215ENST00000552823 ABCA2Q9BZC7 2435 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 COLCA2A8K830 154 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 C1QTNF9BB2RNN3 333 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 CCL21O00585 134 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 RAB13P51153 203 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 SSTP61278 116 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 FABP9Q0Z7S8 132 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 TBR1Q16650 682 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 SPATA31B1PQ5VZV4 182 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 STUMQ69YW2 141 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 HCP5Q6MZN7 132 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 OR10X1Q8NGY0 326 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 Q8TCH9 128 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 EDARADDQ8WWZ3 215 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 ZNF251Q9BRH9 671 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 WDR61Q9GZS3 305 aaKnown RBP4.62□□□□□ -1.67
LIMA1-215ENST00000552823 SLC35D1Q9NTN3 355 aa4.62□□□□□ -1.67
LIMA1-215ENST00000552823 SLC25A10Q9UBX3 287 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-215ENST00000552823 GAB2Q9UQC2 676 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms