RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TNCP24821 2201 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 PCNX2A6NKB5 2137 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 ZNF318Q5VUA4 2279 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 KLF7O75840 302 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 IGHEP01854 428 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 LINC00614P0C842 121 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 SRD5A2P31213 254 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 CEBPDP49716 269 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 EDDM3BP56851 147 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 UBE2NP61088 152 aaKnown RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 RPP30P78346 268 aaKnown RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 TET2Q6N021 2002 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 ZNF808Q8N4W9 903 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 ZNF709Q8N972 641 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 OR2M7Q8NG81 312 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 LRFN3Q9BTN0 628 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 WNT10AQ9GZT5 417 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 DLL3Q9NYJ7 618 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 MED13LQ71F56 2210 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 AKAP6Q13023 2319 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 HCFC1P51610 2035 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 KIR2DS1A0A191URI9 304 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 ODAMA1E959 279 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-214ENST00000552783 AQP7O14520 342 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 NXPH2O95156 264 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 IGHV3-13P01766 116 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 IGHV3-7P01780 117 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 CTRLP40313 264 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 KIR2DS4P43632 304 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 B3GALT5-AS1P59052 145 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 KRTDAPP60985 99 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 LCN2P80188 198 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 KIR2DS1Q14954 304 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 OR1C1Q15619 314 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 ACSF3Q4G176 576 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-214ENST00000552783 UNQ5815/PRO19632Q6UWF5 114 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 GGNQ86UU5 652 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 LSM10Q969L4 123 aaKnown RBP4.06□□□□□ -1.76
LIMA1-214ENST00000552783 SPSB4Q96A44 273 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 VAMP8Q9BV40 100 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 C1QTNF5Q9BXJ0 243 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 OBP2BQ9NPH6 170 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 ASCL3Q9NQ33 180 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 PILRBQ9UKJ0 227 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 FZR1Q9UM11 496 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 SVEP1Q4LDE5 3571 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 S1PR2O95136 353 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 SLC25A6P12236 298 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 IER3P46695 156 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 FOXL1Q12952 345 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 LCN12Q6JVE5 192 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 KCNIP4Q6PIL6 250 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 LYG1Q8N1E2 194 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 FAM19A2Q8N3H0 131 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 DEFB123Q8N688 67 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 ST6GALNAC3Q8NDV1 305 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 IMMP1LQ96LU5 166 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 CIB3Q96Q77 187 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-214ENST00000552783 MRPL18Q9H0U6 180 aaKnown RBP4.06□□□□□ -1.76
LIMA1-214ENST00000552783 WDR54Q9H977 334 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 GNB4Q9HAV0 340 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 RYDENQ9NUL5 291 aaKnown RBP4.06□□□□□ -1.76
LIMA1-214ENST00000552783 ZFP30Q9Y2G7 519 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 YTHDF2Q9Y5A9 579 aaKnown RBP4.06□□□□□ -1.76
LIMA1-214ENST00000552783 ADGRG4Q8IZF6 3080 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 PLCE1Q9P212 2302 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 LOC105371242A0A075B767 164 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 C17orf98A8MV24 154 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 M0QZK8 103 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 DEGS1O15121 323 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 VENTXO95231 258 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 CRISP2P16562 243 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 TIMP3P35625 211 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 YPEL3P61236 119 aaPredicted RBP4.06□□□□□ -1.76
LIMA1-214ENST00000552783 SELENOTP62341 195 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 EDDM3AQ14507 147 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 MSMO1Q15800 293 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 CEACAM21Q3KPI0 293 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 ATP1A1-AS1Q5TC04 95 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 SPATA31B1PQ5VZV4 182 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 COLCA1Q6ZS62 124 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 TMEM105Q8N8V8 129 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 KCNE4Q8WWG9 221 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 NINJ1Q92982 152 aa4.06□□□□□ -1.76
LIMA1-214ENST00000552783 ABCA4P78363 2273 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 TMEM265A0A087WTH1 108 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 PINLYPA6NC86 204 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 HYPMO75409 117 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 FOXH1O75593 365 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 LYZL6O75951 148 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 ARL14EPLP0DKL9 152 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 CDC34P49427 236 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-214ENST00000552783 PTTG1IPP53801 180 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 VHLLQ6RSH7 139 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 TIPARPQ7Z3E1 657 aaKnown RBP4.05□□□□□ -1.76
LIMA1-214ENST00000552783 PPP1R32Q7Z5V6 425 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 WDR86Q86TI4 376 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 OR5AU1Q8NGC0 362 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 RFESDQ8TAC1 157 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms