RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 CYB5AP00167 134 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 IGLV6-57P01721 117 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 APOA1P02647 267 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 IL3P08700 152 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 OR5AC1P0C628 307 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 GABRA1P14867 456 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 MYL12AP19105 171 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 PRTN3P24158 256 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 KDELR2P33947 212 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 SERPINB10P48595 397 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 POLR2HP52434 150 aaKnown RBP1.2□□□□□ -2.22
LIMA1-209ENST00000552008 CTBP2P56545 445 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 DSCR4P56555 118 aaPredicted RBP1.2□□□□□ -2.22
LIMA1-209ENST00000552008 CDC42P60953 191 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 PCBD1P61457 104 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 SELENOWP63302 87 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 KRR1Q13601 381 aaKnown RBP1.2□□□□□ -2.22
LIMA1-209ENST00000552008 SSX1Q16384 188 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 BCL2A1Q16548 175 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 ARHGAP11BQ3KRB8 267 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 CCSMST1Q4G0I0 132 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 ACTBL2Q562R1 376 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 TNFAIP8L3Q5GJ75 292 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 TMEM69Q5SWH9 247 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 MRPL2Q5T653 305 aaKnown RBP1.2□□□□□ -2.22
LIMA1-209ENST00000552008 HES3Q5TGS1 186 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 C16orf87Q6PH81 154 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 TMEM136Q6ZRR5 245 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 DPPA2Q7Z7J5 298 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 LINC00596Q86U02 117 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 RBM45Q8IUH3 476 aaKnown RBP1.2□□□□□ -2.22
LIMA1-209ENST00000552008 SYS1Q8N2H4 156 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 PACRGLQ8N7B6 248 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 LINC00304Q8N9R0 145 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 DRAXINQ8NBI3 349 aaPredicted RBP1.2□□□□□ -2.22
LIMA1-209ENST00000552008 PLPP5Q8NEB5 264 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 DEFB124Q8NES8 71 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 OR8A1Q8NGG7 326 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 CLHC1Q8NHS4 586 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 PIGXQ8TBF5 258 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 TEX47Q8TBZ9 253 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 ZNF675Q8TD23 568 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 GNPDA2Q8TDQ7 276 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 BLNKQ8WV28 456 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 C10orf82Q8WW14 230 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 MUCL1Q96DR8 90 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 CCDC115Q96NT0 180 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 S100A13Q99584 98 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 CGREF1Q99674 301 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 ANGPTL4Q9BY76 406 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 SLC19A3Q9BZV2 496 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 YIPF3Q9GZM5 350 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 CCDC90BQ9GZT6 254 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 CXorf21Q9HAI6 301 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 TPT1P8Q9HAU6 139 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 ACOT13Q9NPJ3 140 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 CKLFQ9UBR5 152 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 ZNF229Q9UJW7 825 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 DKKL1Q9UK85 242 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 MCTS1Q9ULC4 181 aaKnown RBP1.2□□□□□ -2.22
LIMA1-209ENST00000552008 PAIP2BQ9ULR5 123 aaKnown RBP1.2□□□□□ -2.22
LIMA1-209ENST00000552008 NOP16Q9Y3C1 178 aaKnown RBP1.2□□□□□ -2.22
LIMA1-209ENST00000552008 TPRKBQ9Y3C4 175 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 MED31Q9Y3C7 131 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 POLR3HQ9Y535 204 aaPredicted RBP1.2□□□□□ -2.22
LIMA1-209ENST00000552008 TRAPPC1Q9Y5R8 145 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 GMEB1Q9Y692 573 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 TCHHQ07283 1943 aa1.2□□□□□ -2.22
LIMA1-209ENST00000552008 OTOFQ9HC10 1997 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 SCN10AQ9Y5Y9 1956 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 A0A087WXM4 84 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 LOC100506127A0A0U1RQW1 187 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 KIR2DS1A0A191URI9 304 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 LOC102725191A0A1B0GVB3 256 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 SPAARA0A1B0GVQ0 90 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 SMIM31A0A1B0GVY4 71 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 A0A1W2PQD3 144 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 TRAPPC13A5PLN9 417 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 EFCAB10A6NFE3 127 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 OR2AT4A6NND4 320 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 CD300LBA8K4G0 201 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 EFCAB9A8MZ26 197 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 LEUTXA8MZ59 168 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 hCG_2039718K7EN88 272 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 M0QX08 132 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 FAAHO00519 579 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 UBFD1O14562 309 aaKnown RBP1.19□□□□□ -2.22
LIMA1-209ENST00000552008 MRPS14O60783 128 aaKnown RBP1.19□□□□□ -2.22
LIMA1-209ENST00000552008 MRPL33O75394 65 aaKnown RBP1.19□□□□□ -2.22
LIMA1-209ENST00000552008 OR5F1O95221 314 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 TNFAIP8O95379 198 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 FADS2O95864 444 aaKnown RBP1.19□□□□□ -2.22
LIMA1-209ENST00000552008 SOD1P00441 154 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 SERPINA1P01009 418 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 HMGN2P05204 90 aaKnown RBP1.19□□□□□ -2.22
LIMA1-209ENST00000552008 CD2P06729 351 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 CRHP06850 196 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 OR12D1P0DN82 309 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 ZNF3P17036 446 aa1.19□□□□□ -2.22
LIMA1-209ENST00000552008 GPX2P18283 190 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms