RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 KIR2DL2P43627 348 aaPredicted RBP12.65□□□□□ -0.39
CUX1-214ENST00000550008 VSTM2AQ8TAG5 236 aa12.65□□□□□ -0.39
CUX1-214ENST00000550008 SIRT7Q9NRC8 400 aa12.65□□□□□ -0.39
CUX1-214ENST00000550008 NAT8Q9UHE5 227 aa12.65□□□□□ -0.39
CUX1-214ENST00000550008 TCAPO15273 167 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 PSPNO60542 156 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 CT45A10P0DMU9 189 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 KDF1Q8NAX2 398 aaPredicted RBP12.64□□□□□ -0.39
CUX1-214ENST00000550008 OR1L8Q8NGR8 309 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 TXN2Q99757 166 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 A8MXK9 166 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 RAMP3O60896 148 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 SUMO1P63165 101 aaKnown RBP12.64□□□□□ -0.39
CUX1-214ENST00000550008 SLC35B1P78383 322 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 RSPO1Q2MKA7 263 aaPredicted RBP12.64□□□□□ -0.39
CUX1-214ENST00000550008 KHDC3LQ587J8 217 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 OR8B3Q8NGG8 313 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 OR4X1Q8NH49 305 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 BTF3L4Q96K17 158 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 OR8B2Q96RD0 313 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 GINS3Q9BRX5 216 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 SFXN3Q9BWM7 321 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 SERF2P84101 59 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 WDR25Q64LD2 544 aaPredicted RBP12.64□□□□□ -0.39
CUX1-214ENST00000550008 NAT8BQ9UHF3 227 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 TCF19Q9Y242 345 aa12.64□□□□□ -0.39
CUX1-214ENST00000550008 A0A087X0M5 115 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 A0A1B0GX30 115 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 K7EQM0 130 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 GATCO43716 136 aaKnown RBP12.63□□□□□ -0.39
CUX1-214ENST00000550008 NDUFB4O95168 129 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 CD55P08174 381 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 ANOS1P23352 680 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 CAMPP49913 170 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 SLC35E4Q6ICL7 350 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 WDR82Q6UXN9 313 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 MDS2Q8NDY4 140 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 TIMM9Q9Y5J7 89 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 COL4A4P53420 1690 aaPredicted RBP12.63□□□□□ -0.39
CUX1-214ENST00000550008 LINC00205P59089 165 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 SPCS3P61009 180 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 BSPH1Q075Z2 132 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 TNFRSF19Q9NS68 423 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 YLPM1P49750 1951 aaKnown RBP12.63□□□□□ -0.39
CUX1-214ENST00000550008 TRBV6-7A0A0A0MS04 114 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 KIAA1324LA8MWY0 1029 aaPredicted RBP12.63□□□□□ -0.39
CUX1-214ENST00000550008 IQCF6A8MYZ5 107 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 PAX6P26367 422 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 ARF6P62330 175 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 ETFRF1Q6IPR1 90 aa12.63□□□□□ -0.39
CUX1-214ENST00000550008 CSN1S1P47710 185 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 OR2T10Q8NGZ9 312 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 C1orf147Q96MC9 270 aaPredicted RBP12.62□□□□□ -0.39
CUX1-214ENST00000550008 SEBOXQ9HB31 216 aaPredicted RBP12.62□□□□□ -0.39
CUX1-214ENST00000550008 SS18L1O75177 396 aaPredicted RBP12.62□□□□□ -0.39
CUX1-214ENST00000550008 MEF2BQ02080 365 aaPredicted RBP12.62□□□□□ -0.39
CUX1-214ENST00000550008 MARVELD3Q96A59 401 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 NPVFQ9HCQ7 196 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 PLSCR2Q9NRY7 297 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 IGHV1-18A0A0C4DH31 117 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 XKRY2A2RUG3 117 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 CCL3L1P16619 93 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 OR1L4Q8NGR5 311 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 GTF3AQ92664 365 aaKnown RBP12.62□□□□□ -0.39
CUX1-214ENST00000550008 METRNQ9UJH8 293 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 LYNX1G3V0Z9 82 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 AP4M1O00189 453 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 LYNX1P0DP58 116 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 ZNF343Q6P1L6 599 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 OR2T6Q8NHC8 308 aa12.62□□□□□ -0.39
CUX1-214ENST00000550008 BARX1Q9HBU1 254 aaPredicted RBP12.62□□□□□ -0.39
CUX1-214ENST00000550008 TRBV23-1A0A0A0MS06 115 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 SERTM2A0A1B0GWG4 89 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 CHEK1O14757 476 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 RANP62826 216 aaKnown RBP12.61□□□□□ -0.39
CUX1-214ENST00000550008 RNF166Q96A37 237 aaPredicted RBP12.61□□□□□ -0.39
CUX1-214ENST00000550008 RCC1LQ96I51 464 aaKnown RBP12.61□□□□□ -0.39
CUX1-214ENST00000550008 MRPL37Q9BZE1 423 aaKnown RBP12.61□□□□□ -0.39
CUX1-214ENST00000550008 PARD6AQ9NPB6 346 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 IDI2-AS1Q9NZ38 188 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 ZDHHC8Q9ULC8 765 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 ZNF503-AS2A6NEH8 195 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 ETV2O00321 342 aaPredicted RBP12.61□□□□□ -0.39
CUX1-214ENST00000550008 FCN1O00602 326 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 PMCHP20382 165 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 PNRC1Q12796 327 aaPredicted RBP12.61□□□□□ -0.39
CUX1-214ENST00000550008 TMUB1Q9BVT8 246 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 TECRQ9NZ01 308 aaKnown RBP12.61□□□□□ -0.39
CUX1-214ENST00000550008 FUT9Q9Y231 359 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 H3BTX0 84 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 J3QW42 95 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 KRTDAPP60985 99 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 HIST1H3AP68431 136 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 POM121Q96HA1 1249 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 SGK494Q96LW2 274 aa12.61□□□□□ -0.39
CUX1-214ENST00000550008 FAM3BP58499 235 aaPredicted RBP12.6□□□□□ -0.39
CUX1-214ENST00000550008 GCSAMQ8N6F7 178 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 LSM10Q969L4 123 aaKnown RBP12.6□□□□□ -0.39
CUX1-214ENST00000550008 WFDC1Q9HC57 220 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 MANBALQ9NQG1 85 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms