RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 M0R143 59 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 M0R1X1 148 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 OR7C2O60412 319 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 NPPCP23582 126 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 CTSSP25774 331 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 RPL39P5Q59GN2 51 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 ZNF324BQ6AW86 544 aaPredicted RBP12.31□□□□□ -0.44
HOXC11-202ENST00000546378 OR8I2Q8N0Y5 310 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 SCCPDHQ8NBX0 429 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 MCRIP2Q9BUT9 160 aaKnown RBP12.31□□□□□ -0.44
HOXC11-202ENST00000546378 LIN7CQ9NUP9 197 aaKnown RBP12.31□□□□□ -0.44
HOXC11-202ENST00000546378 NAT8BQ9UHF3 227 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 A0A087WWC5 75 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 RBFOX2O43251 390 aaKnown RBP eCLIP12.31□□□□□ -0.44
HOXC11-202ENST00000546378 UBE2NP61088 152 aaKnown RBP12.31□□□□□ -0.44
HOXC11-202ENST00000546378 PNRC1Q12796 327 aaPredicted RBP12.31□□□□□ -0.44
HOXC11-202ENST00000546378 HLA-DRB5Q30154 266 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 LRFN3Q9BTN0 628 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 NDUFAF3Q9BU61 184 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 SPTBN4Q9H254 2564 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 CLCF1Q9UBD9 225 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 TRAV3A0A0B4J244 114 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 FOXH1O75593 365 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 SERF1AO75920 110 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 IL18BPO95998 194 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 IGLV3-1P01715 115 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 SLC25A53Q5H9E4 307 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 ABLIM2Q6H8Q1 611 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 ZNF573Q86YE8 665 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 OR4P4Q8NGL7 312 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 GALMQ96C23 342 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 R3HDM4Q96D70 268 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 ZNRD1Q9P1U0 126 aa12.31□□□□□ -0.44
HOXC11-202ENST00000546378 IGHV3-21A0A0B4J1V1 117 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 AMTP48728 403 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 TNFSF10P50591 281 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 UCP2P55851 309 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 TCF15Q12870 199 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 SSPNQ14714 243 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 ETFRF1Q6IPR1 90 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 DECR2Q9NUI1 292 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 A0A1W2PRD5 423 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 A0A1W2PRF3 423 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 A0A1W2PRM7 423 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 WISP2O76076 250 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 HPRT1P00492 218 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 PFN1P07737 140 aaKnown RBP12.3□□□□□ -0.44
HOXC11-202ENST00000546378 CD24P25063 80 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 SRD5A2P31213 254 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 CAMPP49913 170 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 GNB1P62873 340 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 SNIP1Q8TAD8 396 aaKnown RBP12.3□□□□□ -0.44
HOXC11-202ENST00000546378 REPIN1Q9BWE0 567 aaKnown RBP12.3□□□□□ -0.44
HOXC11-202ENST00000546378 NPCDR1Q9BY65 106 aa12.3□□□□□ -0.44
HOXC11-202ENST00000546378 RNASE7Q9H1E1 156 aaKnown RBP12.3□□□□□ -0.44
HOXC11-202ENST00000546378 POLR3KQ9Y2Y1 108 aaPredicted RBP12.3□□□□□ -0.44
HOXC11-202ENST00000546378 RRHO14718 337 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 HBZP02008 142 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 CRISP2P16562 243 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 LHX2P50458 406 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 OR8B8Q15620 311 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 OR4A16Q8NH70 328 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 OIT3Q8WWZ8 545 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 UHRF2Q96PU4 802 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 SH2D1BO14796 132 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 HINT1P49773 126 aaPredicted RBP12.29□□□□□ -0.44
HOXC11-202ENST00000546378 MMDQ15546 238 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 SLC25A40Q8TBP6 338 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 DIRC2Q96SL1 478 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 TECRQ9NZ01 308 aaKnown RBP12.29□□□□□ -0.44
HOXC11-202ENST00000546378 LOC102723996A0A087X1L8 192 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 C12orf77C9JDV5 145 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 TIMM8AO60220 97 aaPredicted RBP12.29□□□□□ -0.44
HOXC11-202ENST00000546378 MLANAQ16655 118 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 MAJINQ3KP22 176 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 LCN12Q6JVE5 192 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 CYP2G1PQ6ZSU1 146 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 VAMP8Q9BV40 100 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 MRPL37Q9BZE1 423 aaKnown RBP12.29□□□□□ -0.44
HOXC11-202ENST00000546378 PLEKHA3Q9HB20 300 aa12.29□□□□□ -0.44
HOXC11-202ENST00000546378 FOXO1Q12778 655 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 OR1C1Q15619 314 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 MSMO1Q15800 293 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 PRSS33Q8NF86 280 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 RND1Q92730 232 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 CTXND1A0A1B0GTU2 59 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 LINC00473A8K010 186 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 NUTF2P61970 127 aaKnown RBP12.28□□□□□ -0.44
HOXC11-202ENST00000546378 ZPBPQ9BS86 351 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 DUXBA0A1W2PPF3 345 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 B4DEV8 164 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 ZZEF1O43149 2961 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 CTXN2P0C2S0 81 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 UTF1Q5T230 341 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 OR1L6Q8NGR2 347 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 OCC1Q8TAD7 63 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.28□□□□□ -0.44
HOXC11-202ENST00000546378 OR6C3Q9NZP0 311 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 TP53TG5Q9Y2B4 290 aa12.28□□□□□ -0.44
HOXC11-202ENST00000546378 PRR33A8MZF0 331 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms