RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 NUP210LQ5VU65 1888 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 TMEM238LA0A1B0GVL6 79 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 HELTA6NFD8 242 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 WIPF3A6NGB9 483 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 A6NJY4 79 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 H0YL77 283 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 MGST3O14880 152 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 HIST1H1EP10412 219 aaKnown RBP4.9□□□□□ -1.62
VPS50-220ENST00000544910 FOLR2P14207 255 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 HIST1H1BP16401 226 aaKnown RBP4.9□□□□□ -1.62
VPS50-220ENST00000544910 HERVK_113P61574 105 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 ZNF497Q6ZNH5 498 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 PLPPR1Q8TBJ4 325 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 AAMDCQ9H7C9 122 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 SAP30LQ9HAJ7 183 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 PRNDQ9UKY0 176 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 OR51B2Q9Y5P1 312 aa4.9□□□□□ -1.62
VPS50-220ENST00000544910 TRAV38-1A0A0B4J264 116 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 TRAV24A0A0B4J272 114 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 NCBP2LA6PVI3 153 aaKnown RBP4.9□□□□□ -1.63
VPS50-220ENST00000544910 CEACAM18A8MTB9 384 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 CD5P06127 495 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 MPV17P39210 176 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 WNT5AP41221 380 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 CAMPP49913 170 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 HGFACQ04756 655 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 CSRP2Q16527 193 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 RNF138Q8WVD3 245 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 SPRR3Q9UBC9 169 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 JPT1Q9UK76 154 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 OR2T8A6NH00 312 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 IGLV3-1P01715 115 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 CLEC3BP05452 202 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 CELA3BP08861 270 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 HERPUD1Q15011 391 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 IZUMO4Q1ZYL8 232 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 LRRC75BQ2VPJ9 315 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 C1orf162Q8NEQ5 155 aaPredicted RBP4.9□□□□□ -1.63
VPS50-220ENST00000544910 CLDND2Q8NHS1 167 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 OR4C12Q96R67 309 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 SLX1AQ9BQ83 275 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 ZNF581Q9P0T4 197 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 NDUFS8O00217 210 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 ZG16O60844 167 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 PRSS1P07477 247 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 PSMB2P49721 201 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 ASCL5Q7RTU5 278 aa4.9□□□□□ -1.63
VPS50-220ENST00000544910 DOCK9Q9BZ29 2069 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 ARHGEF17Q96PE2 2063 aaPredicted RBP4.89□□□□□ -1.63
VPS50-220ENST00000544910 ORM1P02763 201 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 FAM157CP0CG43 387 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 OPRK1P41145 380 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 MEF2BQ02080 365 aaPredicted RBP4.89□□□□□ -1.63
VPS50-220ENST00000544910 TEPPQ6URK8 271 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 TIMD4Q96H15 378 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 VCX2Q9H322 139 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 HES4Q9HCC6 221 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 THADAQ6YHU6 1953 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 IFNL4K9M1U5 179 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 WNT9BO14905 357 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 TMPRSS2O15393 492 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 SNRNP200O75643 2136 aaKnown RBP4.89□□□□□ -1.63
VPS50-220ENST00000544910 CNIH1O95406 144 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 SRP19P09132 144 aaKnown RBP4.89□□□□□ -1.63
VPS50-220ENST00000544910 LCN2P80188 198 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 Q6ZS49 121 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 OR4F17Q8NGA8 305 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 GUCD1Q96NT3 240 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 PCGF1Q9BSM1 259 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 QTRT1Q9BXR0 403 aaKnown RBP4.89□□□□□ -1.63
VPS50-220ENST00000544910 DNAJC4Q9NNZ3 241 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 A0A1B0GW64 132 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 A0A1W2PPE3 182 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 P01737 135 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 TTC32Q5I0X7 151 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 MIEN1Q9BRT3 115 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 MARCH11A6NNE9 402 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 C12orf77C9JDV5 145 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 K7N7A8 449 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 MPDU1O75352 247 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 PEAR1Q5VY43 1037 aaPredicted RBP4.89□□□□□ -1.63
VPS50-220ENST00000544910 NIT1Q86X76 327 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 TMEM116Q8NCL8 245 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 STXBP6Q8NFX7 210 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 SSMEM1Q8WWF3 244 aa4.89□□□□□ -1.63
VPS50-220ENST00000544910 ODAMA1E959 279 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 PROB1E7EW31 1015 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 LRP4O75096 1905 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 OR2J3O76001 311 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 SMIM17P0DL12 118 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 NPY1RP25929 384 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 SSTR5P35346 364 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 DNLZQ5SXM8 178 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 WDR25Q64LD2 544 aaPredicted RBP4.88□□□□□ -1.63
VPS50-220ENST00000544910 ACSM6Q6P461 480 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 MRPL52Q86TS9 123 aaKnown RBP4.88□□□□□ -1.63
VPS50-220ENST00000544910 TGIF2LYQ8IUE0 185 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 ZNF525Q8N782 197 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 DOCK8Q8NF50 2099 aa4.88□□□□□ -1.63
VPS50-220ENST00000544910 OR4P4Q8NGL7 312 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms