RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 HDHD3Q9BSH5 251 aaPredicted RBP16.74■□□□□ 0.27
HDAC4-215ENST00000543185 SOSTQ9BQB4 213 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 C5orf66Q9H5L9 145 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 SHISA8B8ZZ34 492 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 CCL2P13500 99 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 RASL10BQ96S79 203 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 SH3BGRL3Q9H299 93 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 TNFRSF19Q9NS68 423 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 METTL12A8MUP2 240 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 PTGDSP41222 190 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 UCP3P55916 312 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 H2BFSP57053 126 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 KRTCAP3Q53RY4 240 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 IGHV5-51A0A0C4DH38 117 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 NDUFA2O43678 99 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 BGLAPP02818 100 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 CXCL16Q9H2A7 254 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 ELOVL5Q9NYP7 299 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 CENPWQ5EE01 88 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 PLXNB3Q9ULL4 1909 aa16.74■□□□□ 0.27
HDAC4-215ENST00000543185 EFNB1P98172 346 aa16.73■□□□□ 0.27
HDAC4-215ENST00000543185 PRKNO60260 465 aaPredicted RBP16.73■□□□□ 0.27
HDAC4-215ENST00000543185 MFRPQ9BY79 579 aa16.73■□□□□ 0.27
HDAC4-215ENST00000543185 SHISA7A6NL88 538 aa16.73■□□□□ 0.27
HDAC4-215ENST00000543185 CTGFP29279 349 aa16.73■□□□□ 0.27
HDAC4-215ENST00000543185 SHISA5Q8N114 240 aa16.73■□□□□ 0.27
HDAC4-215ENST00000543185 NDUFAF3Q9BU61 184 aa16.73■□□□□ 0.27
HDAC4-215ENST00000543185 DENND4AQ7Z401 1863 aa16.73■□□□□ 0.27
HDAC4-215ENST00000543185 CHODLQ9H9P2 273 aa16.73■□□□□ 0.27
HDAC4-215ENST00000543185 MGST3O14880 152 aa16.73■□□□□ 0.27
HDAC4-215ENST00000543185 CXCL10P02778 98 aa16.73■□□□□ 0.27
HDAC4-215ENST00000543185 PSG6Q00889 435 aa16.73■□□□□ 0.27
HDAC4-215ENST00000543185 MBNL2Q5VZF2 373 aaKnown RBP16.73■□□□□ 0.27
HDAC4-215ENST00000543185 A0A1B0GUT8 65 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 RNF224P0DH78 156 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 C1orf100Q5SVJ3 147 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 TMEM101Q96IK0 257 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 TICRRQ7Z2Z1 1910 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 LIFP15018 202 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 P2RY6Q15077 328 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 TRAV39A0A0B4J263 110 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 NPIPB13A6NJU9 1138 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 NPIPB4C9JG80 1138 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 TSPAN2O60636 221 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 SEC11AP67812 179 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 CX3CL1P78423 397 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 ZNF831Q5JPB2 1677 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 RPL27AP46776 148 aaKnown RBP16.72■□□□□ 0.27
HDAC4-215ENST00000543185 EFNB2P52799 333 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 LAMTOR1Q6IAA8 161 aa16.72■□□□□ 0.27
HDAC4-215ENST00000543185 RBMY1BA6NDE4 496 aaKnown RBP16.71■□□□□ 0.27
HDAC4-215ENST00000543185 RBMY1EA6NEQ0 496 aaKnown RBP16.71■□□□□ 0.27
HDAC4-215ENST00000543185 RBMY1DP0C7P1 496 aaKnown RBP16.71■□□□□ 0.27
HDAC4-215ENST00000543185 RBMY1A1P0DJD3 496 aaKnown RBP16.71■□□□□ 0.27
HDAC4-215ENST00000543185 RBMY1CP0DJD4 496 aa16.71■□□□□ 0.27
HDAC4-215ENST00000543185 C2orf68Q2NKX9 166 aa16.71■□□□□ 0.27
HDAC4-215ENST00000543185 VN1R4Q7Z5H5 301 aa16.71■□□□□ 0.27
HDAC4-215ENST00000543185 PLXNA3P51805 1871 aa16.71■□□□□ 0.27
HDAC4-215ENST00000543185 IGHV1OR21-1A0A087WYE8 117 aa16.71■□□□□ 0.27
HDAC4-215ENST00000543185 VEGFBP49765 207 aa16.71■□□□□ 0.27
HDAC4-215ENST00000543185 MDP1Q86V88 176 aa16.71■□□□□ 0.27
HDAC4-215ENST00000543185 PLCE1Q9P212 2302 aa16.71■□□□□ 0.27
HDAC4-215ENST00000543185 LINC01549A6NIU2 74 aa16.71■□□□□ 0.27
HDAC4-215ENST00000543185 DDB2Q92466 427 aa16.71■□□□□ 0.27
HDAC4-215ENST00000543185 CBLN1P23435 193 aa16.71■□□□□ 0.27
HDAC4-215ENST00000543185 PRDM13Q9H4Q3 707 aa16.71■□□□□ 0.26
HDAC4-215ENST00000543185 SHANK3Q9BYB0 1731 aa16.71■□□□□ 0.26
HDAC4-215ENST00000543185 FAM181AQ8N9Y4 354 aa16.71■□□□□ 0.26
HDAC4-215ENST00000543185 FTH1P19P0C7X4 201 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 SUMO2P61956 95 aaKnown RBP16.7■□□□□ 0.26
HDAC4-215ENST00000543185 GATAD1Q8WUU5 269 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 C1QL1O75973 258 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 COL10A1Q03692 680 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 GPR146Q96CH1 333 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 ASIPP42127 132 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 CIARTQ8N365 385 aaPredicted RBP16.7■□□□□ 0.26
HDAC4-215ENST00000543185 APOMO95445 188 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 IGHV3-13P01766 116 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 IGHV3-7P01780 117 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 PGFP49763 221 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 P2RY4P51582 365 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 ASAH2BP0C7U1 165 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 NANOS3P60323 173 aaKnown RBP16.7■□□□□ 0.26
HDAC4-215ENST00000543185 BEX4Q9NWD9 120 aaPredicted RBP16.7■□□□□ 0.26
HDAC4-215ENST00000543185 TRBV20OR9-2A0A075B6H5 130 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 ZFAND6Q6FIF0 208 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 ORMDL3Q8N138 153 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 IL36BQ9NZH7 164 aa16.7■□□□□ 0.26
HDAC4-215ENST00000543185 PGPEP1LA6NFU8 196 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 ID4P47928 161 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 LIMS1P48059 325 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 MFAP4P55083 255 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 TMEM196Q5HYL7 178 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 WDYHV1Q96HA8 205 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 GRIFINA4D1Z8 144 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 SLC25A20O43772 301 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 HOXA5P20719 270 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 CYP2G1PQ6ZSU1 146 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 TMEM160Q9NX00 188 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 RAX2Q96IS3 184 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms