RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 SIKE1Q9BRV8 207 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 METTL9Q9H1A3 318 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 ZNF556Q9HAH1 456 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 SCPEP1Q9HB40 452 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 ADGRL4Q9HBW9 690 aa3.45□□□□□ -1.86
LIMS1-214ENST00000542845 OR4C46A6NHA9 309 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 RAB29O14966 203 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 PRKYO43930 277 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 YPEL1O60688 119 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 PAGE4O60829 102 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 MT-ND2P03891 347 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 HTR1AP08908 422 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 RBM11P57052 281 aaKnown RBP3.44□□□□□ -1.86
LIMS1-214ENST00000542845 BLOC1S1P78537 153 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 HTD2P86397 168 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 C15orf32Q32M92 178 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 DMKNQ6E0U4 476 aaPredicted RBP3.44□□□□□ -1.86
LIMS1-214ENST00000542845 LAMTOR1Q6IAA8 161 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 OR4A47Q6IF82 309 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 RAB12Q6IQ22 244 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 C8orf82Q6P1X6 216 aaPredicted RBP3.44□□□□□ -1.86
LIMS1-214ENST00000542845 TRAT1Q6PIZ9 186 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 ASCL4Q6XD76 172 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 C19orf35Q6ZS72 473 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 GPHB5Q86YW7 130 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 PXT1Q8NFP0 134 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 ACOT12Q8WYK0 555 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 GALMQ96C23 342 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 ASB9Q96DX5 294 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 ZNF503Q96F45 646 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 PELI1Q96FA3 418 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 C8orf49Q96NF6 230 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 YPEL2Q96QA6 119 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 ABHD1Q96SE0 405 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 SPAG8Q99932 426 aaPredicted RBP3.44□□□□□ -1.86
LIMS1-214ENST00000542845 RNF5Q99942 180 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 HRH4Q9H3N8 390 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 MRPL27Q9P0M9 148 aaKnown RBP3.44□□□□□ -1.86
LIMS1-214ENST00000542845 PIPOXQ9P0Z9 390 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 ABCD2Q9UBJ2 740 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 RPL36Q9Y3U8 105 aaKnown RBP3.44□□□□□ -1.86
LIMS1-214ENST00000542845 DMRT1Q9Y5R6 373 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 PEX16Q9Y5Y5 336 aa3.44□□□□□ -1.86
LIMS1-214ENST00000542845 LRP1BQ9NZR2 4599 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 IGHV3OR16-8A0A075B7F1 116 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 A0A1W2PP11 408 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 DPPA5A6NC42 116 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 DBX1A6NMT0 343 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 USP17L23D6RBM5 183 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 ZNF207O43670 478 aaKnown RBP3.43□□□□□ -1.86
LIMS1-214ENST00000542845 SNX3O60493 162 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 BAG2O95816 211 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 CST1P01037 141 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 APOA2P02652 100 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 AMBPP02760 352 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 CTSDP07339 412 aaPredicted RBP3.43□□□□□ -1.86
LIMS1-214ENST00000542845 OR2T7P0C7T2 308 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 HTN3P15516 51 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 RAB3AP20336 220 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 ATP6V1B2P21281 511 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 NPY1RP25929 384 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 EPHA2P29317 976 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 FUSP35637 526 aaKnown RBP eCLIP3.43□□□□□ -1.86
LIMS1-214ENST00000542845 CAMPP49913 170 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 NANOS3P60323 173 aaKnown RBP3.43□□□□□ -1.86
LIMS1-214ENST00000542845 KRTAP10-2P60368 255 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 DLK1P80370 383 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 SSBP2P81877 361 aaPredicted RBP3.43□□□□□ -1.86
LIMS1-214ENST00000542845 IRF3Q14653 427 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 C12orf74Q32Q52 190 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 SLC22A6Q4U2R8 563 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 UNQ9165/PRO28630Q6UXU0 137 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 HACD2Q6Y1H2 254 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 IDO2Q6ZQW0 420 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 ZNF367Q7RTV3 350 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 HS3ST5Q8IZT8 346 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 LYPD1Q8N2G4 141 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 C6orf223Q8N319 242 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 GBGT1Q8N5D6 347 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 Q8NAQ8 132 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 NECAP1Q8NC96 275 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 OR2G2Q8NGZ5 317 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 SETD6Q8TBK2 473 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 CYYR1Q96J86 154 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 IL4I1Q96RQ9 567 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 MLST8Q9BVC4 326 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 KRTAP9-3Q9BYQ3 159 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 IFI27L2Q9H2X8 130 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 C5orf66Q9H5L9 145 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 SLC35D1Q9NTN3 355 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 ABRACLQ9P1F3 81 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 JPT1Q9UK76 154 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 CELA1Q9UNI1 258 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 NACAE9PAV3 2078 aa3.43□□□□□ -1.86
LIMS1-214ENST00000542845 TRBV9A0A0B4J1U6 114 aa3.42□□□□□ -1.86
LIMS1-214ENST00000542845 J3QLW9 94 aa3.42□□□□□ -1.86
LIMS1-214ENST00000542845 MRPS14O60783 128 aaKnown RBP3.42□□□□□ -1.86
LIMS1-214ENST00000542845 SULT1C4O75897 302 aa3.42□□□□□ -1.86
LIMS1-214ENST00000542845 ISG15P05161 165 aa3.42□□□□□ -1.86
LIMS1-214ENST00000542845 HNRNPCP07910 306 aaKnown RBP eCLIP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms