RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 NDUFB4O95168 129 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 PPIAL4GP0DN37 164 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 LCN12Q6JVE5 192 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 GFRALQ6UXV0 394 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 C1orf122Q6ZSJ8 110 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 OR10G3Q8NGC4 313 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 ST6GALNAC6Q969X2 333 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 KCNIP2Q9NS61 270 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 SCN3AQ9NY46 2000 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 K7EP34 96 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 SRIP30626 198 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 SPTAN1Q13813 2472 aaKnown RBP9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 BCORP1Q8N888 145 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 APOBEC3DQ96AK3 386 aaPredicted RBP9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 QTRT1Q9BXR0 403 aaKnown RBP9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 THYN1Q9P016 225 aa9.23□□□□□ -0.93
CLSTN3-207ENST00000537408 RHBDL1O75783 438 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 TMEM50AO95807 157 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 TGFBR3Q03167 851 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 SLC38A11Q08AI6 406 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 C5orf64Q2M2E5 130 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 TCTEX1D4Q5JR98 221 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 MRPL21Q7Z2W9 205 aaKnown RBP9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 FAM19A2Q8N3H0 131 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 ICE1Q9Y2F5 2266 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 HLA-DQA1P01909 254 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 IAPPP10997 89 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 PMP22Q01453 160 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 EGR4Q05215 589 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 FAM162BQ5T6X4 162 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 OR2K2Q8NGT1 345 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 OR4C3Q8NH37 302 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 ZNF501Q96CX3 271 aaPredicted RBP9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 TMEM191AQ9H0A3 160 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 GEMIN7Q9H840 131 aaKnown RBP9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 WDR54Q9H977 334 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 HEATR5BQ9P2D3 2071 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 ZNF816-ZNF321PA0A0X1KG74 233 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 PPYP01298 95 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 TIMP3P35625 211 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 HAPLN4Q86UW8 402 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 TXNDC17Q9BRA2 123 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 C2orf72A6NCS6 295 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 FAM231BA6NCW3 169 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 CRYAAP02489 173 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 HTR1DP28221 377 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 SRYQ05066 204 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 LTC4SQ16873 150 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 CBLN3Q6UW01 205 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 RPP25LQ8N5L8 163 aaKnown RBP9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 GATAD1Q8WUU5 269 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 PMCHL2Q9BQD1 86 aa9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 NXF5Q9H1B4 397 aaKnown RBP9.22□□□□□ -0.93
CLSTN3-207ENST00000537408 PPIAL4CA0A0B4J2A2 164 aa9.21□□□□□ -0.93
CLSTN3-207ENST00000537408 H0YJW9 148 aa9.21□□□□□ -0.93
CLSTN3-207ENST00000537408 ANGPTL7O43827 346 aa9.21□□□□□ -0.93
CLSTN3-207ENST00000537408 RNF144BQ7Z419 303 aa9.21□□□□□ -0.93
CLSTN3-207ENST00000537408 SPACA9Q96E40 222 aaPredicted RBP9.21□□□□□ -0.93
CLSTN3-207ENST00000537408 TMED7-TICAM2A0A0A6YYA0 188 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 OR4C46A6NHA9 309 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 SYNGR2O43760 224 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 UCP1P25874 307 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 SRD5A2P31213 254 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 CA7P43166 264 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 C17orf67Q0P5P2 114 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 MMD2Q8IY49 270 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 TSKUQ8WUA8 353 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 EAF1Q96JC9 268 aaPredicted RBP9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 OR4C12Q96R67 309 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 SFXN3Q9BWM7 321 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 FAM181BA6NEQ2 426 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 PRR19A6NJB7 356 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 FOXI3A8MTJ6 420 aaPredicted RBP9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 F5H5K5 113 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 LGALS4P56470 323 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 MGAT2Q10469 447 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 CD300EQ496F6 205 aaPredicted RBP9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 BPIFA4PQ86YQ2 179 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 ZNF479Q96JC4 524 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 TMEM70Q9BUB7 260 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 COL6A6A6NMZ7 2263 aa9.21□□□□□ -0.94
CLSTN3-207ENST00000537408 DXOO77932 396 aaKnown RBP9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 CLEC3BP05452 202 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 NPY1RP25929 384 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 GDF1P27539 372 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 GPR183P32249 361 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 OR8B8Q15620 311 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 PLCXD3Q63HM9 321 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 ODF3L1Q8IXM7 274 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 OR10AG1Q8NH19 301 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 LIME1Q9H400 295 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 HIST1H1EP10412 219 aaKnown RBP9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 GNB1P62873 340 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 NMSQ5H8A3 153 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 RNFT1Q5M7Z0 435 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 SPANXN5Q5MJ07 72 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 NEGR1Q7Z3B1 354 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 NPVFQ9HCQ7 196 aa9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.2□□□□□ -0.94
CLSTN3-207ENST00000537408 A0A1W2PPV4 95 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms