RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 C5orf46Q6UWT4 87 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 RPS19BP1Q86WX3 136 aaKnown RBP1.13□□□□□ -2.23
CD44-238ENST00000534296 TMEM156Q8N614 296 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 UBL4BQ8N7F7 174 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 RAB2BQ8WUD1 216 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 Q9BRP9 147 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 MRPS26Q9BYN8 205 aaKnown RBP1.13□□□□□ -2.23
CD44-238ENST00000534296 OR51I2Q9H344 312 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 DOK5Q9P104 306 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 DKKL1Q9UK85 242 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 STAB1Q9NY15 2570 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 SCN9AQ15858 1988 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 TNRC18O15417 2968 aaPredicted RBP1.12□□□□□ -2.23
CD44-238ENST00000534296 ANKHD1Q8IWZ3 2542 aaKnown RBP1.12□□□□□ -2.23
CD44-238ENST00000534296 MEIKINA0A087WXM9 373 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 OR6C6A6NF89 314 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 RFPL4AA6NLU0 287 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 DISC1C4P0D8 188 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 RFPL4AL1F8VTS6 287 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 M0QZ92 97 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 BHLHE40O14503 412 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 COCHO43405 550 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 ZNF189O75820 626 aaPredicted RBP1.12□□□□□ -2.23
CD44-238ENST00000534296 CXCL2P19875 107 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 PSMB8P28062 276 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 CCR2P41597 374 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 DAPP51397 102 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 AP2S1P53680 142 aaPredicted RBP1.12□□□□□ -2.23
CD44-238ENST00000534296 HIST1H4AP62805 103 aaKnown RBP1.12□□□□□ -2.23
CD44-238ENST00000534296 PLPPR5Q32ZL2 321 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 SLC36A2Q495M3 483 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 LPCAT4Q643R3 524 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 Q6ZTI0 123 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 FAM19A5Q7Z5A7 132 aaPredicted RBP1.12□□□□□ -2.23
CD44-238ENST00000534296 COMMD7Q86VX2 200 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 LRRC28Q86X40 367 aaPredicted RBP1.12□□□□□ -2.23
CD44-238ENST00000534296 C1orf174Q8IYL3 243 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 RIBC1Q8N443 379 aaPredicted RBP1.12□□□□□ -2.23
CD44-238ENST00000534296 TESCQ96BS2 214 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 SFRP2Q96HF1 295 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 NMNAT3Q96T66 252 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 CXCL16Q9H2A7 254 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 MAP1LC3AQ9H492 121 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 CST9LQ9H4G1 147 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 HHLA3Q9XRX5 114 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 RTEL1-TNFRSF6BF6WH68 1400 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 MPDZO75970 2070 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 WDR90Q96KV7 1748 aa1.12□□□□□ -2.23
CD44-238ENST00000534296 FASNP49327 2511 aaKnown RBP1.12□□□□□ -2.23
CD44-238ENST00000534296 MAP3K5Q99683 1374 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 SLX4Q8IY92 1834 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 GPR98Q8WXG9 6306 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 IGHV3-64A0A075B6Q5 118 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 A0A1B0GV50 99 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 TMEM269A0A1B0GVZ9 245 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 F5H768 121 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 FAM228BP0C875 321 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 CCL3P10147 92 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 KCNE1P15382 129 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 RBM11P57052 281 aaKnown RBP1.11□□□□□ -2.23
CD44-238ENST00000534296 CXCR4P61073 352 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 RPS24P62847 133 aaKnown RBP1.11□□□□□ -2.23
CD44-238ENST00000534296 CAV1Q03135 178 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 SLC38A11Q08AI6 406 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 RSU1Q15404 277 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 MIAQ16674 131 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 LYZL1Q6UWQ5 148 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 LRRN1Q6UXK5 716 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 IQCF2Q8IXL9 164 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 DDI1Q8WTU0 396 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 EEF1AKMT1Q8WVE0 214 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 RNF133Q8WVZ7 376 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 ACOT12Q8WYK0 555 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 CCL13Q99616 98 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 SPZ1Q9BXG8 430 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 GPR84Q9NQS5 396 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 AK3Q9UIJ7 227 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 LSM5Q9Y4Y9 91 aaKnown RBP1.11□□□□□ -2.23
CD44-238ENST00000534296 NUP160Q12769 1436 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 NOTCH1P46531 2555 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 REREQ9P2R6 1566 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 PXDNLA1KZ92 1463 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 LRRK2Q5S007 2527 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 NCOR2Q9Y618 2525 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 VWFP04275 2813 aa1.11□□□□□ -2.23
CD44-238ENST00000534296 BPTFQ12830 3046 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 SPTBN4Q9H254 2564 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 MALRD1Q5VYJ5 2156 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 TRGV2A0A075B6R0 118 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 IGHV1-69-2A0A0G2JMI3 117 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 F8W036 122 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 H0Y980 276 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 TNNC2P02585 160 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 ZNF728P0DKX0 622 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 MSNP26038 577 aaKnown RBP1.1□□□□□ -2.23
CD44-238ENST00000534296 CA5AP35218 305 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 MAGEA12P43365 314 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 RAB13P51153 203 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 MAGOHP61326 146 aaKnown RBP1.1□□□□□ -2.23
CD44-238ENST00000534296 RPL30P62888 115 aaKnown RBP1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms