RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 CCL25O15444 150 aa11.9□□□□□ -0.5
USP48-213ENST00000529637 TNFSF15O95150 251 aa11.9□□□□□ -0.5
USP48-213ENST00000529637 NXPH2O95156 264 aa11.9□□□□□ -0.5
USP48-213ENST00000529637 TPPP2P59282 170 aa11.9□□□□□ -0.5
USP48-213ENST00000529637 LSM10Q969L4 123 aaKnown RBP11.9□□□□□ -0.5
USP48-213ENST00000529637 FBXL7Q9UJT9 491 aa11.9□□□□□ -0.5
USP48-213ENST00000529637 TNRC6BQ9UPQ9 1833 aaKnown RBP11.9□□□□□ -0.5
USP48-213ENST00000529637 A0A1W2PNU3 283 aaPredicted RBP11.9□□□□□ -0.51
USP48-213ENST00000529637 SP1P08047 785 aa11.9□□□□□ -0.51
USP48-213ENST00000529637 RBX1P62877 108 aa11.9□□□□□ -0.51
USP48-213ENST00000529637 ARG2P78540 354 aa11.9□□□□□ -0.51
USP48-213ENST00000529637 FOXL1Q12952 345 aa11.9□□□□□ -0.51
USP48-213ENST00000529637 COL5A1-AS1Q5SY13 56 aa11.9□□□□□ -0.51
USP48-213ENST00000529637 FGFRL1Q8N441 504 aa11.9□□□□□ -0.51
USP48-213ENST00000529637 ZNF709Q8N972 641 aa11.9□□□□□ -0.51
USP48-213ENST00000529637 Q8NFD4 153 aa11.9□□□□□ -0.51
USP48-213ENST00000529637 SFRP2Q96HF1 295 aa11.9□□□□□ -0.51
USP48-213ENST00000529637 CIB3Q96Q77 187 aaPredicted RBP11.9□□□□□ -0.51
USP48-213ENST00000529637 KLF13Q9Y2Y9 288 aaPredicted RBP11.9□□□□□ -0.51
USP48-213ENST00000529637 MPC1Q9Y5U8 109 aa11.9□□□□□ -0.51
USP48-213ENST00000529637 GVINP1Q7Z2Y8 2422 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 OR5B21A6NL26 309 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 RPP30P78346 268 aaKnown RBP11.89□□□□□ -0.51
USP48-213ENST00000529637 ALKBH2Q6NS38 261 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 NANOS1Q8WY41 292 aaKnown RBP11.89□□□□□ -0.51
USP48-213ENST00000529637 ZDHHC16Q969W1 377 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 SLC35E1Q96K37 410 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 SLC17A3O00476 420 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 CDIPTO14735 213 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 RAMP3O60896 148 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 CELA3BP08861 270 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 MSMO1Q15800 293 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 FAM53AQ6NSI3 398 aaPredicted RBP11.89□□□□□ -0.51
USP48-213ENST00000529637 CXorf67Q86X51 503 aaPredicted RBP11.89□□□□□ -0.51
USP48-213ENST00000529637 ARL6IP6Q8N6S5 226 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 PCSK5Q92824 1860 aa11.89□□□□□ -0.51
USP48-213ENST00000529637 DSPP15924 2871 aaKnown RBP11.89□□□□□ -0.51
USP48-213ENST00000529637 CD46P15529 392 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 CRISP2P16562 243 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 KRTDAPP60985 99 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 SRSF7Q16629 238 aaKnown RBP eCLIP11.88□□□□□ -0.513e-8■□□□□ 10.9
USP48-213ENST00000529637 OR5AU1Q8NGC0 362 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 NPCDR1Q9BY65 106 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 TIMM9Q9Y5J7 89 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 TRAV34A0A0B4J273 112 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 LYZL6O75951 148 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 KRASP01116 189 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 YPEL3P61236 119 aaPredicted RBP11.88□□□□□ -0.51
USP48-213ENST00000529637 TBC1D28Q2M2D7 210 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 HLA-DRB5Q30154 266 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 MRPL52Q86TS9 123 aaKnown RBP11.88□□□□□ -0.51
USP48-213ENST00000529637 Q8N976 141 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 PARD6GQ9BYG4 376 aaPredicted RBP11.88□□□□□ -0.51
USP48-213ENST00000529637 CACNA1GO43497 2377 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 C19orf67A6NJJ6 358 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 CEBPDP49716 269 aaPredicted RBP11.88□□□□□ -0.51
USP48-213ENST00000529637 KRTCAP3Q53RY4 240 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 RTL8AQ9BWD3 113 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 SAMD10Q9BYL1 202 aa11.88□□□□□ -0.51
USP48-213ENST00000529637 PMS2P5A8MQ11 134 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 C21orf140B9A014 251 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 J3QT63 122 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 AQP7O14520 342 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 COX5AP20674 150 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 G6PCP35575 357 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 BAGE3Q86Y29 109 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 BAGE2Q86Y30 109 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 MRPL18Q9H0U6 180 aaKnown RBP11.87□□□□□ -0.51
USP48-213ENST00000529637 TRGV5A0A0B4J1U4 118 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 ZG16O60844 167 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 SELENOTP62341 195 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 PAFAH1B2P68402 229 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 CNEP1R1Q8N9A8 125 aa11.87□□□□□ -0.51
USP48-213ENST00000529637 OR2H2O95918 312 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 ALKBH6Q3KRA9 238 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 ZNF808Q8N4W9 903 aaPredicted RBP11.86□□□□□ -0.51
USP48-213ENST00000529637 OCC1Q8TAD7 63 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 BTF3L4Q96K17 158 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 OBP2BQ9NPH6 170 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 CADP27708 2225 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 TMPRSS2O15393 492 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 RBMXL2O75526 392 aaKnown RBP11.86□□□□□ -0.51
USP48-213ENST00000529637 KITLGP21583 273 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 CDC34P49427 236 aaPredicted RBP11.86□□□□□ -0.51
USP48-213ENST00000529637 HOXA4Q00056 320 aaPredicted RBP11.86□□□□□ -0.51
USP48-213ENST00000529637 MRPL49Q13405 166 aaKnown RBP11.86□□□□□ -0.51
USP48-213ENST00000529637 SCCPDHQ8NBX0 429 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 FER1L6-AS2Q96M78 137 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 SPINK4O60575 86 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 ZNF90Q03938 601 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 OR1L6Q8NGR2 347 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 LRFN3Q9BTN0 628 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 TMEM147Q9BVK8 224 aa11.86□□□□□ -0.51
USP48-213ENST00000529637 OR5G3P0C626 314 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 CD99P14209 185 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 CEACAM8P31997 349 aaPredicted RBP11.85□□□□□ -0.51
USP48-213ENST00000529637 PTTG1IPP53801 180 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 LINC00205P59089 165 aa11.85□□□□□ -0.51
USP48-213ENST00000529637 ZNF816Q0VGE8 651 aaPredicted RBP11.85□□□□□ -0.51
USP48-213ENST00000529637 PSG7Q13046 419 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms