RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 NECAP1Q8NC96 275 aa17.73■□□□□ 0.43
CPSF1-202ENST00000527827 KCTD12Q96CX2 325 aaKnown RBP17.73■□□□□ 0.43
CPSF1-202ENST00000527827 V9GY05 133 aa17.73■□□□□ 0.43
CPSF1-202ENST00000527827 MFNGO00587 321 aa17.72■□□□□ 0.43
CPSF1-202ENST00000527827 CASQ2O14958 399 aaPredicted RBP17.72■□□□□ 0.43
CPSF1-202ENST00000527827 CALRP27797 417 aaKnown RBP17.72■□□□□ 0.43
CPSF1-202ENST00000527827 CDK10Q15131 360 aa17.72■□□□□ 0.43
CPSF1-202ENST00000527827 TRAM1Q15629 374 aa17.72■□□□□ 0.43
CPSF1-202ENST00000527827 GUCA2BQ16661 112 aa17.72■□□□□ 0.43
CPSF1-202ENST00000527827 C15orf32Q32M92 178 aa17.72■□□□□ 0.43
CPSF1-202ENST00000527827 HES5Q5TA89 166 aa17.72■□□□□ 0.43
CPSF1-202ENST00000527827 SPIN2AQ99865 258 aa17.72■□□□□ 0.43
CPSF1-202ENST00000527827 SPIN2BQ9BPZ2 258 aa17.72■□□□□ 0.43
CPSF1-202ENST00000527827 GINS4Q9BRT9 223 aa17.72■□□□□ 0.43
CPSF1-202ENST00000527827 OR2J3O76001 311 aa17.71■□□□□ 0.43
CPSF1-202ENST00000527827 HLA-AP01891 365 aaKnown RBP17.71■□□□□ 0.43
CPSF1-202ENST00000527827 HSMCR30P0CW71 290 aa17.71■□□□□ 0.43
CPSF1-202ENST00000527827 GNB3P16520 340 aa17.71■□□□□ 0.43
CPSF1-202ENST00000527827 FABP5Q01469 135 aa17.71■□□□□ 0.43
CPSF1-202ENST00000527827 OR10R2Q8NGX6 335 aa17.71■□□□□ 0.43
CPSF1-202ENST00000527827 WDR89Q96FK6 387 aaPredicted RBP17.71■□□□□ 0.43
CPSF1-202ENST00000527827 SCN3BQ9NY72 215 aa17.71■□□□□ 0.43
CPSF1-202ENST00000527827 TECRQ9NZ01 308 aaKnown RBP17.71■□□□□ 0.43
CPSF1-202ENST00000527827 IGKV1D-8A0A087WSZ0 117 aa17.7■□□□□ 0.42
CPSF1-202ENST00000527827 LGALS9O00182 355 aa17.7■□□□□ 0.42
CPSF1-202ENST00000527827 PSMA1P25786 263 aaKnown RBP17.7■□□□□ 0.42
CPSF1-202ENST00000527827 MMD2Q8IY49 270 aa17.7■□□□□ 0.42
CPSF1-202ENST00000527827 A0A075B6Q4 140 aa17.69■□□□□ 0.42
CPSF1-202ENST00000527827 RAB27BO00194 218 aa17.69■□□□□ 0.42
CPSF1-202ENST00000527827 GGCTO75223 188 aaKnown RBP17.69■□□□□ 0.42
CPSF1-202ENST00000527827 ACTL6BO94805 426 aa17.69■□□□□ 0.42
CPSF1-202ENST00000527827 OR2C1O95371 312 aa17.69■□□□□ 0.42
CPSF1-202ENST00000527827 HIST1H1DP16402 221 aaKnown RBP17.69■□□□□ 0.42
CPSF1-202ENST00000527827 Q6ZS49 121 aa17.69■□□□□ 0.42
CPSF1-202ENST00000527827 C19orf35Q6ZS72 473 aa17.69■□□□□ 0.42
CPSF1-202ENST00000527827 SELENOKQ9Y6D0 94 aa17.69■□□□□ 0.42
CPSF1-202ENST00000527827 HMX3A6NHT5 357 aa17.68■□□□□ 0.42
CPSF1-202ENST00000527827 TEX22C9J3V5 150 aa17.68■□□□□ 0.42
CPSF1-202ENST00000527827 CREBL2O60519 120 aaPredicted RBP17.68■□□□□ 0.42
CPSF1-202ENST00000527827 RANBP1P43487 201 aa17.68■□□□□ 0.42
CPSF1-202ENST00000527827 PSMD7P51665 324 aa17.68■□□□□ 0.42
CPSF1-202ENST00000527827 MLLT11Q13015 90 aaPredicted RBP17.68■□□□□ 0.42
CPSF1-202ENST00000527827 FAM209BQ5JX69 171 aa17.68■□□□□ 0.42
CPSF1-202ENST00000527827 CACNG8Q8WXS5 425 aa17.68■□□□□ 0.42
CPSF1-202ENST00000527827 DUSP21Q9H596 190 aa17.68■□□□□ 0.42
CPSF1-202ENST00000527827 ZNF257Q9Y2Q1 563 aa17.68■□□□□ 0.42
CPSF1-202ENST00000527827 FCGR3BO75015 233 aa17.67■□□□□ 0.42
CPSF1-202ENST00000527827 GADD45AP24522 165 aa17.67■□□□□ 0.42
CPSF1-202ENST00000527827 SLC25A42Q86VD7 318 aa17.67■□□□□ 0.42
CPSF1-202ENST00000527827 GPHB5Q86YW7 130 aa17.67■□□□□ 0.42
CPSF1-202ENST00000527827 LINC00476Q8WZB0 136 aa17.67■□□□□ 0.42
CPSF1-202ENST00000527827 DCUN1D5Q9BTE7 237 aa17.67■□□□□ 0.42
CPSF1-202ENST00000527827 E7EUB6 86 aa17.66■□□□□ 0.42
CPSF1-202ENST00000527827 J3QRK9 145 aa17.66■□□□□ 0.42
CPSF1-202ENST00000527827 IL6RP08887 468 aaPredicted RBP17.66■□□□□ 0.42
CPSF1-202ENST00000527827 CBLN1P23435 193 aa17.66■□□□□ 0.42
CPSF1-202ENST00000527827 OR10A3P58181 314 aa17.66■□□□□ 0.42
CPSF1-202ENST00000527827 RPL30P62888 115 aaKnown RBP17.66■□□□□ 0.42
CPSF1-202ENST00000527827 TMEM61Q8N0U2 210 aa17.66■□□□□ 0.42
CPSF1-202ENST00000527827 VKORC1L1Q8N0U8 176 aa17.66■□□□□ 0.42
CPSF1-202ENST00000527827 ZNF645Q8N7E2 425 aa17.66■□□□□ 0.42
CPSF1-202ENST00000527827 CCDC140Q96MF4 163 aa17.66■□□□□ 0.42
CPSF1-202ENST00000527827 OVOL2Q9BRP0 275 aa17.66■□□□□ 0.42
CPSF1-202ENST00000527827 FBXL7Q9UJT9 491 aa17.66■□□□□ 0.42
CPSF1-202ENST00000527827 ELF5Q9UKW6 265 aaPredicted RBP17.66■□□□□ 0.42
CPSF1-202ENST00000527827 A0A1B0GW64 132 aa17.65■□□□□ 0.42
CPSF1-202ENST00000527827 IGHV3-23P01764 117 aa17.65■□□□□ 0.42
CPSF1-202ENST00000527827 RAB6AP20340 208 aa17.65■□□□□ 0.42
CPSF1-202ENST00000527827 ARFRP1Q13795 201 aa17.65■□□□□ 0.42
CPSF1-202ENST00000527827 KCTD9Q7L273 389 aa17.65■□□□□ 0.42
CPSF1-202ENST00000527827 SLC16A13Q7RTY0 426 aa17.65■□□□□ 0.42
CPSF1-202ENST00000527827 FANCD2OSQ96PS1 177 aa17.65■□□□□ 0.42
CPSF1-202ENST00000527827 CENPOQ9BU64 300 aa17.65■□□□□ 0.42
CPSF1-202ENST00000527827 OR51E2Q9H255 320 aa17.65■□□□□ 0.42
CPSF1-202ENST00000527827 ACOT13Q9NPJ3 140 aa17.65■□□□□ 0.42
CPSF1-202ENST00000527827 TPRKBQ9Y3C4 175 aa17.65■□□□□ 0.42
CPSF1-202ENST00000527827 TMEM213A2RRL7 107 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 NPIPB5A8MRT5 1133 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 RGS10O43665 173 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 NDUFB8O95169 186 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 TALDO1P37837 337 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 OR2B11Q5JQS5 317 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 CLEC19AQ6UXS0 136 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 MGLLQ99685 303 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 VCXQ9H320 206 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 MLXQ9UH92 298 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 RBMX2Q9Y388 322 aaKnown RBP17.64■□□□□ 0.41
CPSF1-202ENST00000527827 PRELID3BQ9Y3B1 194 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 S4R3C0 116 aa17.64■□□□□ 0.41
CPSF1-202ENST00000527827 IFITM5A6NNB3 132 aa17.63■□□□□ 0.41
CPSF1-202ENST00000527827 IGLV2-14P01704 120 aa17.63■□□□□ 0.41
CPSF1-202ENST00000527827 ARL3P36405 182 aa17.63■□□□□ 0.41
CPSF1-202ENST00000527827 ZNF57Q68EA5 555 aaPredicted RBP17.63■□□□□ 0.41
CPSF1-202ENST00000527827 GGTLC1Q9BX51 225 aa17.63■□□□□ 0.41
CPSF1-202ENST00000527827 OR2W1Q9Y3N9 320 aa17.63■□□□□ 0.41
CPSF1-202ENST00000527827 A8MWP6 167 aa17.62■□□□□ 0.41
CPSF1-202ENST00000527827 KBTBD11O94819 623 aa17.62■□□□□ 0.41
CPSF1-202ENST00000527827 HLA-DQB1P01920 261 aa17.62■□□□□ 0.41
CPSF1-202ENST00000527827 NFYAP23511 347 aaPredicted RBP17.62■□□□□ 0.41
CPSF1-202ENST00000527827 DTYMKP23919 212 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms