RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 NCS1P62166 190 aa15.96■□□□□ 0.15
VPS28-206ENST00000526734 RPL30P62888 115 aaKnown RBP15.96■□□□□ 0.15
VPS28-206ENST00000526734 TNXAQ16473 311 aa15.96■□□□□ 0.15
VPS28-206ENST00000526734 MFSD4AQ8N468 514 aa15.96■□□□□ 0.15
VPS28-206ENST00000526734 SECTM1Q8WVN6 248 aa15.96■□□□□ 0.15
VPS28-206ENST00000526734 MS4A10Q96PG2 267 aa15.96■□□□□ 0.15
VPS28-206ENST00000526734 PHB2Q99623 299 aa15.96■□□□□ 0.15
VPS28-206ENST00000526734 AIFM2Q9BRQ8 373 aa15.96■□□□□ 0.15
VPS28-206ENST00000526734 ZNF355PQ9NSJ1 428 aa15.96■□□□□ 0.15
VPS28-206ENST00000526734 C13orf42A0A1B0GVH6 325 aa15.95■□□□□ 0.14
VPS28-206ENST00000526734 WI2-2373I1.2A0A1W2PRP0 233 aa15.95■□□□□ 0.14
VPS28-206ENST00000526734 OVOL1O14753 267 aa15.95■□□□□ 0.14
VPS28-206ENST00000526734 HSPB1P04792 205 aaKnown RBP15.95■□□□□ 0.14
VPS28-206ENST00000526734 TAS2R46P59540 309 aa15.95■□□□□ 0.14
VPS28-206ENST00000526734 VBP1P61758 197 aa15.95■□□□□ 0.14
VPS28-206ENST00000526734 CATR1Q13166 79 aa15.95■□□□□ 0.14
VPS28-206ENST00000526734 MRGPRG-AS1Q2M3A8 158 aa15.95■□□□□ 0.14
VPS28-206ENST00000526734 CASTOR1Q8WTX7 329 aa15.95■□□□□ 0.14
VPS28-206ENST00000526734 SRSF12Q8WXF0 261 aaKnown RBP15.95■□□□□ 0.14
VPS28-206ENST00000526734 SPIN2AQ99865 258 aa15.95■□□□□ 0.14
VPS28-206ENST00000526734 SPIN2BQ9BPZ2 258 aa15.95■□□□□ 0.14
VPS28-206ENST00000526734 TAS2R8Q9NYW2 309 aa15.95■□□□□ 0.14
VPS28-206ENST00000526734 SMIM31A0A1B0GVY4 71 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 RBFOX2O43251 390 aaKnown RBP eCLIP15.94■□□□□ 0.142e-9■■■□□ 14.6
VPS28-206ENST00000526734 GABARAPO95166 117 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 HRASP01112 189 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 SMIM18P0DKX4 95 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 PTHLHP12272 177 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 NAT1P18440 290 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 PRSS3P35030 304 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 HERV-K104P61576 105 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 ZNF429Q86V71 674 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 ANKRD13BQ86YJ7 626 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 OR5T1Q8NG75 326 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 DCUN1D4Q92564 292 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 AP3S1Q92572 193 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 USMG5Q96IX5 58 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 TINAGL1Q9GZM7 467 aaPredicted RBP15.94■□□□□ 0.14
VPS28-206ENST00000526734 SLC5A7Q9GZV3 580 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 CCL28Q9NRJ3 127 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 DNAH3Q8TD57 4116 aa15.94■□□□□ 0.14
VPS28-206ENST00000526734 MSGN1A6NI15 193 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 MPPED1O15442 326 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 OR2A4O95047 310 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 OR9G9P0C7N8 305 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 MAS1LP35410 378 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 RORCP51449 518 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 OR2B11Q5JQS5 317 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 IDO2Q6ZQW0 420 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 OR2A7Q96R45 310 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 MRPS26Q9BYN8 205 aaKnown RBP15.93■□□□□ 0.14
VPS28-206ENST00000526734 ALX4Q9H161 411 aaPredicted RBP15.93■□□□□ 0.14
VPS28-206ENST00000526734 ZNF430Q9H8G1 570 aaPredicted RBP15.93■□□□□ 0.14
VPS28-206ENST00000526734 SCPEP1Q9HB40 452 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 RANGRFQ9HD47 186 aaPredicted RBP15.93■□□□□ 0.14
VPS28-206ENST00000526734 EHFQ9NZC4 300 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 COMMD3Q9UBI1 195 aa15.93■□□□□ 0.14
VPS28-206ENST00000526734 IGHV4OR15-8A0A075B7B6 117 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 A0A087WW49 117 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 KBTBD11O94819 623 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 IGHV3-11P01762 117 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 ZP3P21754 424 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 DYRK1AQ13627 763 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 MZT2AQ6P582 158 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 DHRS11Q6UWP2 260 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 SLC25A42Q86VD7 318 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 OR5H2Q8NGV7 314 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 TMEM167AQ8TBQ9 72 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 CD300LFQ8TDQ1 290 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 COA4Q9NYJ1 87 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 SCOCQ9UIL1 159 aa15.92■□□□□ 0.14
VPS28-206ENST00000526734 MEIS3P1A6NDR6 274 aa15.91■□□□□ 0.14
VPS28-206ENST00000526734 EIF4EP06730 217 aaKnown RBP15.91■□□□□ 0.14
VPS28-206ENST00000526734 FXYD4P59646 89 aa15.91■□□□□ 0.14
VPS28-206ENST00000526734 DEFB121Q5J5C9 76 aa15.91■□□□□ 0.14
VPS28-206ENST00000526734 PUSL1Q8N0Z8 303 aaKnown RBP15.91■□□□□ 0.14
VPS28-206ENST00000526734 ADAD2Q8NCV1 583 aaKnown RBP15.91■□□□□ 0.14
VPS28-206ENST00000526734 OR4A5Q8NH83 315 aa15.91■□□□□ 0.14
VPS28-206ENST00000526734 DLX4Q92988 240 aaPredicted RBP15.91■□□□□ 0.14
VPS28-206ENST00000526734 FAM223BA6NKX1 122 aa15.9■□□□□ 0.14
VPS28-206ENST00000526734 FCER2P06734 321 aa15.9■□□□□ 0.14
VPS28-206ENST00000526734 SLURP1P55000 103 aa15.9■□□□□ 0.14
VPS28-206ENST00000526734 CTF1Q16619 201 aa15.9■□□□□ 0.14
VPS28-206ENST00000526734 FAM209BQ5JX69 171 aa15.9■□□□□ 0.14
VPS28-206ENST00000526734 FAM223AQ8IWN6 122 aa15.9■□□□□ 0.14
VPS28-206ENST00000526734 SPAG16Q8N0X2 631 aa15.9■□□□□ 0.14
VPS28-206ENST00000526734 GPX8Q8TED1 209 aa15.9■□□□□ 0.14
VPS28-206ENST00000526734 MOB3AQ96BX8 217 aa15.9■□□□□ 0.14
VPS28-206ENST00000526734 ADAM30Q9UKF2 790 aa15.9■□□□□ 0.14
VPS28-206ENST00000526734 SULT1C2O00338 296 aa15.89■□□□□ 0.13
VPS28-206ENST00000526734 TPPPO94811 219 aa15.89■□□□□ 0.13
VPS28-206ENST00000526734 ECI1P42126 302 aa15.89■□□□□ 0.13
VPS28-206ENST00000526734 BRWD1-AS2P59051 145 aa15.89■□□□□ 0.13
VPS28-206ENST00000526734 TAS2R31P59538 309 aa15.89■□□□□ 0.13
VPS28-206ENST00000526734 TMEM17Q86X19 198 aa15.89■□□□□ 0.13
VPS28-206ENST00000526734 BET1LQ9NYM9 111 aa15.89■□□□□ 0.13
VPS28-206ENST00000526734 ZNF256Q9Y2P7 627 aaPredicted RBP15.89■□□□□ 0.13
VPS28-206ENST00000526734 TNFSF12O43508 249 aa15.88■□□□□ 0.13
VPS28-206ENST00000526734 SAP30O75446 220 aa15.88■□□□□ 0.13
VPS28-206ENST00000526734 HPRT1P00492 218 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms