RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 ERVK-16P61578 105 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 TMEM200BQ69YZ2 307 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 OR8G2PQ6IF36 304 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 LYG1Q8N1E2 194 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 CLRN3Q8NCR9 226 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 ZCCHC14Q8WYQ9 949 aaKnown RBP13.07□□□□□ -0.32
USH1C-204ENST00000526313 SLC35B3Q9H1N7 401 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 SMG1Q96Q15 3661 aaKnown RBP13.06□□□□□ -0.32
USH1C-204ENST00000526313 DOCK11Q5JSL3 2073 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 RBFOX3A6NFN3 312 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 FAM90A27PA6NNH2 459 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 C15orf62A8K5M9 175 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 SIAH2O43255 324 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 RBMXL2O75526 392 aaKnown RBP13.06□□□□□ -0.32
USH1C-204ENST00000526313 IL6RP08887 468 aaPredicted RBP13.06□□□□□ -0.32
USH1C-204ENST00000526313 VDAC2P45880 294 aaPredicted RBP13.06□□□□□ -0.32
USH1C-204ENST00000526313 LYPD2Q6UXB3 125 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 OR4A16Q8NH70 328 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 TMEM140Q9NV12 185 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 DAOP14920 347 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 LOXP28300 417 aaPredicted RBP13.06□□□□□ -0.32
USH1C-204ENST00000526313 GRNP28799 593 aaKnown RBP13.06□□□□□ -0.32
USH1C-204ENST00000526313 OR10P1Q8NGE3 313 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 SFT2D1Q8WV19 159 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 RBMXL1Q96E39 390 aaKnown RBP13.06□□□□□ -0.32
USH1C-204ENST00000526313 ZNF714Q96N38 554 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 RARRES2Q99969 163 aa13.06□□□□□ -0.32
USH1C-204ENST00000526313 CISD1Q9NZ45 108 aaKnown RBP13.06□□□□□ -0.32
USH1C-204ENST00000526313 SPTA1P02549 2419 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 TRAV3A0A0B4J244 114 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 NDUFB3O43676 98 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 NDUFA2O43678 99 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 FSTL3O95633 263 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 CT45A6P0DMU7 189 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 CT45A5P0DMU8 189 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 CT45A7P0DMV0 189 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 OR2B8PP59922 312 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 ZNF833PQ6ZTB9 187 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 SSX9Q7RTT3 188 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 VKORC1L1Q8N0U8 176 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 C8orf31Q8N9H6 132 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 ZNF596Q8TC21 504 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 VSIRQ9H7M9 311 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 CTSZQ9UBR2 303 aa13.05□□□□□ -0.32
USH1C-204ENST00000526313 IGHV1-69-2A0A0G2JMI3 117 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 UBE2L5PA0A1B0GUS4 154 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 A0A1B0GV50 99 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 IFNA17P01571 189 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 GNG10P50151 68 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 CDSNQ15517 529 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 ZNF726P1Q15940 193 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 LRRC10Q5BKY1 277 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 RHOVQ96L33 236 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 TMEM204Q9BSN7 226 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 PKDREJQ9NTG1 2253 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 DLX6P56179 175 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 RAB2AP61019 212 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 TMEM41BQ5BJD5 291 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 SPINK9Q5DT21 86 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 ZNF506Q5JVG8 444 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 CLDND2Q8NHS1 167 aa13.04□□□□□ -0.32
USH1C-204ENST00000526313 FOXA2Q9Y261 457 aaPredicted RBP13.04□□□□□ -0.32
USH1C-204ENST00000526313 YLPM1P49750 1951 aaKnown RBP13.03□□□□□ -0.32
USH1C-204ENST00000526313 C15orf61A6NNL5 157 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 DVL1O14640 695 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 CCL3L1P16619 93 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 ERVFRD-1P60508 538 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 OR4A47Q6IF82 309 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 LINC00311Q8N616 119 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 TMEM14BQ9NUH8 114 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 KALRNO60229 2985 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 HRASP01112 189 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 C1QTNF9P0C862 333 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 PMS2P11Q13670 270 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 ICAM4Q14773 271 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 ZNF672Q499Z4 452 aaPredicted RBP13.03□□□□□ -0.32
USH1C-204ENST00000526313 TMEM88Q6PEY1 159 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 RCC1LQ96I51 464 aaKnown RBP13.03□□□□□ -0.32
USH1C-204ENST00000526313 PRORYQ9H606 182 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 TCF19Q9Y242 345 aa13.03□□□□□ -0.32
USH1C-204ENST00000526313 TET2Q6N021 2002 aaPredicted RBP13.02□□□□□ -0.32
USH1C-204ENST00000526313 PRSS46E5RG02 174 aa13.02□□□□□ -0.33
USH1C-204ENST00000526313 SRP19P09132 144 aaKnown RBP13.02□□□□□ -0.33
USH1C-204ENST00000526313 RPP30P78346 268 aaKnown RBP13.02□□□□□ -0.33
USH1C-204ENST00000526313 MUC15Q8N387 334 aa13.02□□□□□ -0.33
USH1C-204ENST00000526313 PRELID1Q9Y255 219 aa13.02□□□□□ -0.33
USH1C-204ENST00000526313 ZZEF1O43149 2961 aa13.02□□□□□ -0.33
USH1C-204ENST00000526313 A0A087X0M5 115 aa13.01□□□□□ -0.33
USH1C-204ENST00000526313 A0A1B0GX30 115 aa13.01□□□□□ -0.33
USH1C-204ENST00000526313 HSPB1P04792 205 aaKnown RBP13.01□□□□□ -0.33
USH1C-204ENST00000526313 HSPE1P61604 102 aaKnown RBP13.01□□□□□ -0.33
USH1C-204ENST00000526313 TMEM155Q4W5P6 130 aa13.01□□□□□ -0.33
USH1C-204ENST00000526313 KHDC3LQ587J8 217 aa13.01□□□□□ -0.33
USH1C-204ENST00000526313 SSX7Q7RTT5 188 aa13.01□□□□□ -0.33
USH1C-204ENST00000526313 CBLN2Q8IUK8 224 aa13.01□□□□□ -0.33
USH1C-204ENST00000526313 GGACTQ9BVM4 153 aa13.01□□□□□ -0.33
USH1C-204ENST00000526313 ZNRD1Q9P1U0 126 aa13.01□□□□□ -0.33
USH1C-204ENST00000526313 TFF3Q07654 80 aa13.01□□□□□ -0.33
USH1C-204ENST00000526313 HFEQ30201 348 aa13.01□□□□□ -0.33
USH1C-204ENST00000526313 FAM71F2Q6NXP2 309 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms