RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PLSCR3Q9NRY6 295 aa8□□□□□ -1.13
VPS28-204ENST00000526054 TSSC4Q9Y5U2 329 aaPredicted RBP8□□□□□ -1.13
VPS28-204ENST00000526054 DISC1C4P0D8 188 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 GPR31O00270 319 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 RRHO14718 337 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 SHOXO15266 292 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 TNFSF12O43508 249 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 FCGR3BO75015 233 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 CRYZL1O95825 349 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 IGHG2P01859 326 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 CNTFRP26992 372 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 GNRHRP30968 328 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 LGALS7P47929 136 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 IFITM3Q01628 133 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 EIF4EBP1Q13541 118 aaPredicted RBP7.99□□□□□ -1.13
VPS28-204ENST00000526054 RYR3Q15413 4870 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 TMEM177Q53S58 311 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 OR2B11Q5JQS5 317 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 TCTEX1D4Q5JR98 221 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 AADACL3Q5VUY0 350 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 ZNF818PQ6ZRF7 136 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 SLC38A6Q8IZM9 456 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 TOMM5Q8N4H5 51 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 POC5Q8NA72 575 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 WFDC9Q8NEX5 89 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 OSR1Q8TAX0 266 aaPredicted RBP7.99□□□□□ -1.13
VPS28-204ENST00000526054 RBMXL1Q96E39 390 aaKnown RBP7.99□□□□□ -1.13
VPS28-204ENST00000526054 RCC1LQ96I51 464 aaKnown RBP7.99□□□□□ -1.13
VPS28-204ENST00000526054 RITA1Q96K30 269 aa7.99□□□□□ -1.13
VPS28-204ENST00000526054 ANKRD20A5PA0PJZ0 165 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 CENPXA8MT69 81 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 AP4M1O00189 453 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 DUS4LO95620 317 aaKnown RBP7.98□□□□□ -1.13
VPS28-204ENST00000526054 HLA-DRB1P01911 266 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 PGAM2P15259 253 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 FAUP35544 74 aaKnown RBP7.98□□□□□ -1.13
VPS28-204ENST00000526054 ECI1P42126 302 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 UCP3P55916 312 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 RPL30P62888 115 aaKnown RBP7.98□□□□□ -1.13
VPS28-204ENST00000526054 ASAH1Q13510 395 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 PSG5Q15238 335 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 RGS21Q2M5E4 152 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 VMA21Q3ZAQ7 101 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 SCGB2B2Q4G0G5 96 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 LIN54Q6MZP7 749 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 LHFPL1Q86WI0 220 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 OR4D10Q8NGI6 311 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 OR4C16Q8NGL9 310 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 OR51H1Q8NH63 302 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 CHPT1Q8WUD6 406 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 DEDD2Q8WXF8 326 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 FBXL15Q9H469 300 aa7.98□□□□□ -1.13
VPS28-204ENST00000526054 METTL1Q9UBP6 276 aaKnown RBP7.98□□□□□ -1.13
VPS28-204ENST00000526054 LINC00854A0A1B0GVQ3 168 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 K7EIL1 84 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 RBFOX2O43251 390 aaKnown RBP eCLIP7.97□□□□□ -1.134e-8■■■■□ 26.4
VPS28-204ENST00000526054 SLC25A17O43808 307 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 CREBL2O60519 120 aaPredicted RBP7.97□□□□□ -1.13
VPS28-204ENST00000526054 PTTG1O95997 202 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 RLN1P04808 185 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 SLC35B1P78383 322 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 PHLDA2Q53GA4 152 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 FAAP20Q6NZ36 180 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 MZT2BQ6NZ67 158 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 C10orf99Q6UWK7 81 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 SPAG16Q8N0X2 631 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 TERB2Q8NHR7 220 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 CD300LFQ8TDQ1 290 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 DPF1Q92782 380 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 ZNF486Q96H40 463 aaPredicted RBP7.97□□□□□ -1.13
VPS28-204ENST00000526054 GPHA2Q96T91 129 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 PRRT1Q99946 306 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 HSPB9Q9BQS6 159 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 C7orf50Q9BRJ6 194 aaKnown RBP7.97□□□□□ -1.13
VPS28-204ENST00000526054 RSRP1Q9BUV0 290 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 GON7Q9BXV9 100 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 SCP2D1Q9UJQ7 156 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 ZNF580Q9UK33 172 aa7.97□□□□□ -1.13
VPS28-204ENST00000526054 COL7A1Q02388 2944 aa7.96□□□□□ -1.13
VPS28-204ENST00000526054 IGHV7-81A0A0B4J1V7 117 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 PSMB11A5LHX3 300 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 PGLYRP1O75594 196 aaPredicted RBP7.96□□□□□ -1.14
VPS28-204ENST00000526054 HRASP01112 189 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 IGLV2-23P01705 113 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 ZNF735P0CB33 412 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 UBE2KP61086 200 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 KLF9Q13886 244 aaPredicted RBP7.96□□□□□ -1.14
VPS28-204ENST00000526054 SURF2Q15527 256 aaPredicted RBP7.96□□□□□ -1.14
VPS28-204ENST00000526054 STPG2Q8N412 459 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 TCTEX1D1Q8N7M0 179 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 CCDC71LQ8N9Z2 235 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 TEX45Q8NA69 505 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 VSTM2AQ8TAG5 236 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 ZFAND1Q8TCF1 268 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 ABHD5Q8WTS1 349 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 AIFM2Q9BRQ8 373 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 OR51J1Q9H342 316 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 PARP11Q9NR21 331 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 SLC2A9Q9NRM0 540 aa7.96□□□□□ -1.14
VPS28-204ENST00000526054 MCUBQ9NWR8 336 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms