RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 TMEM250H0YL14 139 aa13.83□□□□□ -0.19
USP42-207ENST00000521713 SIGLEC5O15389 551 aa13.83□□□□□ -0.19
USP42-207ENST00000521713 RAMP1O60894 148 aa13.83□□□□□ -0.19
USP42-207ENST00000521713 LCN2P80188 198 aa13.83□□□□□ -0.19
USP42-207ENST00000521713 A0A087WWC5 75 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 VENTXO95231 258 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 AGAP20933 346 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 CD1BP29016 333 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 C10orf113Q5VZT2 155 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 OR8I2Q8N0Y5 310 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 MRPL18Q9H0U6 180 aaKnown RBP13.83□□□□□ -0.2
USP42-207ENST00000521713 IGLV3-32A0A0A0MS00 114 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 A0A1W2PP11 408 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 RUNX1Q01196 453 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 GAMTQ14353 236 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 SSMEM1Q8WWF3 244 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 CHODLQ9H9P2 273 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 NPVFQ9HCQ7 196 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 HILPDAQ9Y5L2 63 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 CECR9P0C854 216 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 HOXA5P20719 270 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 OR8A1Q8NGG7 326 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 NEU4Q8WWR8 484 aaPredicted RBP13.83□□□□□ -0.2
USP42-207ENST00000521713 ASCL3Q9NQ33 180 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 AP5S1Q9NUS5 200 aa13.83□□□□□ -0.2
USP42-207ENST00000521713 LOC105371242A0A075B767 164 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 C19orf67A6NJJ6 358 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 LIPFP07098 398 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 MDKP21741 143 aaPredicted RBP13.82□□□□□ -0.2
USP42-207ENST00000521713 RPL30P62888 115 aaKnown RBP13.82□□□□□ -0.2
USP42-207ENST00000521713 EFNB1P98172 346 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 ZNF506Q5JVG8 444 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 WDR25Q64LD2 544 aaPredicted RBP13.82□□□□□ -0.2
USP42-207ENST00000521713 MMD2Q8IY49 270 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 OR10S1Q8NGN2 331 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 OR51B2Q9Y5P1 312 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.82□□□□□ -0.2
USP42-207ENST00000521713 ZNHIT1O43257 154 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 RBM14Q96PK6 669 aaKnown RBP13.82□□□□□ -0.2
USP42-207ENST00000521713 KBTBD11O94819 623 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 RNASE6Q93091 150 aaKnown RBP13.82□□□□□ -0.2
USP42-207ENST00000521713 PEF1Q9UBV8 284 aaKnown RBP13.82□□□□□ -0.2
USP42-207ENST00000521713 AMY1AP04745 511 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 CLDN18P56856 261 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 CALHM1Q8IU99 346 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 ARL6IP6Q8N6S5 226 aa13.82□□□□□ -0.2
USP42-207ENST00000521713 SDK2Q58EX2 2172 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 Q5BKY6 102 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 OR9G1Q8NH87 305 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 TMEM70Q9BUB7 260 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 NDUFB4O95168 129 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 LEPROTL1O95214 131 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 THY1P04216 161 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 TAF15Q92804 592 aaKnown RBP eCLIP13.81□□□□□ -0.2
USP42-207ENST00000521713 JPT1Q9UK76 154 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 CCDC88CQ9P219 2028 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 ZNF716A6NP11 495 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 LINC00587B1AMM8 73 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 C1QL1O75973 258 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 DLX1P56177 255 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 POC1AQ8NBT0 407 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 DYNLRB2Q8TF09 96 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 ZNF256Q9Y2P7 627 aaPredicted RBP13.81□□□□□ -0.2
USP42-207ENST00000521713 LHX2P50458 406 aa13.81□□□□□ -0.2
USP42-207ENST00000521713 IBA57Q5T440 356 aaKnown RBP13.81□□□□□ -0.2
USP42-207ENST00000521713 PSMG3Q9BT73 122 aaPredicted RBP13.81□□□□□ -0.2
USP42-207ENST00000521713 LINC00114Q6XXX2 140 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 OR5P3Q8WZ94 311 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 FAM131CQ96AQ9 280 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 HLA-DRB1P01911 266 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 SCTP09683 121 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 ZP1P60852 638 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 PQLC2Q6ZP29 291 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 ZNF645Q8N7E2 425 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 C9orf106Q8NAJ2 232 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 PDCD11Q14690 1871 aaKnown RBP13.8□□□□□ -0.2
USP42-207ENST00000521713 ZNF318Q5VUA4 2279 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 ALPK2Q86TB3 2170 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 LMX1BO60663 402 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 CEBPDP49716 269 aaPredicted RBP13.8□□□□□ -0.2
USP42-207ENST00000521713 ARF6P62330 175 aa13.8□□□□□ -0.2
USP42-207ENST00000521713 RTTNQ86VV8 2226 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 AREGP15514 252 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 SLC35E4Q6ICL7 350 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 PCSK4Q6UW60 755 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 Q96M66 194 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 SOD3P08294 240 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 OR4X1Q8NH49 305 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 MRPL37Q9BZE1 423 aaKnown RBP13.79□□□□□ -0.2
USP42-207ENST00000521713 E9PLN8 166 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 VKORC1Q9BQB6 163 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 NDUFAF3Q9BU61 184 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 PARLQ9H300 379 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 GCSHP23434 173 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 NMUP48645 174 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 COMPP49747 757 aaPredicted RBP13.79□□□□□ -0.2
USP42-207ENST00000521713 PXMP4Q9Y6I8 212 aa13.79□□□□□ -0.2
USP42-207ENST00000521713 INTS1Q8N201 2190 aaKnown RBP13.79□□□□□ -0.2
USP42-207ENST00000521713 CACNA1HO95180 2353 aa13.78□□□□□ -0.2
USP42-207ENST00000521713 PSMG4Q5JS54 123 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms