RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 SPNS3Q6ZMD2 512 aa11.83□□□□□ -0.52
TCOF1-207ENST00000504761 ISOC2Q96AB3 205 aa11.83□□□□□ -0.52
TCOF1-207ENST00000504761 CHODLQ9H9P2 273 aa11.83□□□□□ -0.52
TCOF1-207ENST00000504761 THYN1Q9P016 225 aa11.83□□□□□ -0.52
TCOF1-207ENST00000504761 ALPK3Q96L96 1907 aa11.83□□□□□ -0.52
TCOF1-207ENST00000504761 LOC105371242A0A075B767 164 aa11.83□□□□□ -0.52
TCOF1-207ENST00000504761 ZNF705GA8MUZ8 300 aaPredicted RBP11.83□□□□□ -0.52
TCOF1-207ENST00000504761 HTR1DP28221 377 aa11.83□□□□□ -0.52
TCOF1-207ENST00000504761 UBE2L3P68036 154 aaKnown RBP11.83□□□□□ -0.52
TCOF1-207ENST00000504761 TEPPQ6URK8 271 aa11.83□□□□□ -0.52
TCOF1-207ENST00000504761 LYRM2Q9NU23 88 aaPredicted RBP11.83□□□□□ -0.52
TCOF1-207ENST00000504761 METTL1Q9UBP6 276 aaKnown RBP11.83□□□□□ -0.52
TCOF1-207ENST00000504761 LINC00862A6NCI5 91 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 ZNF705FA8MVS1 300 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-207ENST00000504761 PITX3O75364 302 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 CD8AP01732 235 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 ZNF705DP0CH99 300 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-207ENST00000504761 ZNF705BP0CI00 300 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-207ENST00000504761 CT45A10P0DMU9 189 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 UCP1P25874 307 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 FAM24BQ8N5W8 94 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 C1RLQ9NZP8 487 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 WASHC3Q9Y3C0 194 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 IGKV3-7A0A075B6H7 116 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 ZNF785A8K8V0 405 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 PAGE4O60829 102 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 HABP2Q14520 560 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-207ENST00000504761 PLSCR2Q9NRY7 297 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 SLC45A2Q9UMX9 530 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 TCF19Q9Y242 345 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 KBTBD11-OT1A0A1B0GTJ5 212 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 MLNRO43193 412 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 PLAUP00749 431 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 LCN2P80188 198 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 GAMTQ14353 236 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 NEUROG1Q92886 237 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 MIOXQ9UGB7 285 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 TRAV14DV4A0A0A6YYC5 116 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 LY6HO94772 140 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 ERVFC1-1P60608 527 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 C1QTNF12Q5T7M4 302 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 OR4X1Q8NH49 305 aa11.82□□□□□ -0.52
TCOF1-207ENST00000504761 PRRC2CQ9Y520 2896 aaKnown RBP11.81□□□□□ -0.52
TCOF1-207ENST00000504761 LIPFP07098 398 aa11.81□□□□□ -0.52
TCOF1-207ENST00000504761 MC5RP33032 325 aa11.81□□□□□ -0.52
TCOF1-207ENST00000504761 ZNF497Q6ZNH5 498 aa11.81□□□□□ -0.52
TCOF1-207ENST00000504761 CBLN2Q8IUK8 224 aa11.81□□□□□ -0.52
TCOF1-207ENST00000504761 FAM216AQ8WUB2 273 aa11.81□□□□□ -0.52
TCOF1-207ENST00000504761 QTRT1Q9BXR0 403 aaKnown RBP11.81□□□□□ -0.52
TCOF1-207ENST00000504761 ZNF106Q9H2Y7 1883 aaKnown RBP11.81□□□□□ -0.52
TCOF1-207ENST00000504761 SRP14P37108 136 aaKnown RBP11.81□□□□□ -0.52
TCOF1-207ENST00000504761 BIVMQ86UB2 503 aa11.81□□□□□ -0.52
TCOF1-207ENST00000504761 FAM90A1Q86YD7 464 aa11.81□□□□□ -0.52
TCOF1-207ENST00000504761 LILRB1Q8NHL6 650 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-207ENST00000504761 YLPM1P49750 1951 aaKnown RBP11.81□□□□□ -0.52
TCOF1-207ENST00000504761 SLC25A5P05141 298 aaKnown RBP11.81□□□□□ -0.52
TCOF1-207ENST00000504761 LGALS7P47929 136 aa11.81□□□□□ -0.52
TCOF1-207ENST00000504761 HSPE1P61604 102 aaKnown RBP11.81□□□□□ -0.52
TCOF1-207ENST00000504761 TRAF4Q9BUZ4 470 aaPredicted RBP11.81□□□□□ -0.52
TCOF1-207ENST00000504761 DOCK11Q5JSL3 2073 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 DPRXA6NFQ7 191 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 C1QTNF9BB2RNN3 333 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 C1QTNF9P0C862 333 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 OR10J1P30954 320 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 CNN1P51911 297 aaKnown RBP11.8□□□□□ -0.52
TCOF1-207ENST00000504761 BAGE3Q86Y29 109 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 BAGE2Q86Y30 109 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 ZNF320A2RRD8 509 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 C11orf94C9JXX5 98 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 WISP2O76076 250 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 SULT1A2P50226 295 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 TMEM241Q24JQ0 296 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 MIC13Q5XKP0 118 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 CCDC144NLQ6NUI1 221 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 PERPQ96FX8 193 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 CLEC7AQ9BXN2 247 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 NPVFQ9HCQ7 196 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 IGSF23A1L1A6 192 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 SRRM5B3KS81 715 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 EGR1P18146 543 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 TCTEX1D1Q8N7M0 179 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 BARX1Q9HBU1 254 aaPredicted RBP11.8□□□□□ -0.52
TCOF1-207ENST00000504761 RNF222A6NCQ9 220 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 H0YIZ8 118 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 RAMP3O60896 148 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 IGKV3-15P01624 115 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 ZNF331Q9NQX6 463 aaPredicted RBP11.8□□□□□ -0.52
TCOF1-207ENST00000504761 PARP11Q9NR21 331 aa11.8□□□□□ -0.52
TCOF1-207ENST00000504761 KBTBD11O94819 623 aa11.79□□□□□ -0.52
TCOF1-207ENST00000504761 GNLYP22749 145 aa11.79□□□□□ -0.52
TCOF1-207ENST00000504761 SLC35E3Q7Z769 313 aa11.79□□□□□ -0.52
TCOF1-207ENST00000504761 TAF15Q92804 592 aaKnown RBP eCLIP11.79□□□□□ -0.52
TCOF1-207ENST00000504761 CRIM1Q9NZV1 1036 aa11.79□□□□□ -0.52
TCOF1-207ENST00000504761 TNFSF13O75888 250 aa11.79□□□□□ -0.52
TCOF1-207ENST00000504761 NAT1P18440 290 aa11.79□□□□□ -0.52
TCOF1-207ENST00000504761 ARL3P36405 182 aa11.79□□□□□ -0.52
TCOF1-207ENST00000504761 AWAT1Q58HT5 328 aa11.79□□□□□ -0.52
TCOF1-207ENST00000504761 KDF1Q8NAX2 398 aaPredicted RBP11.79□□□□□ -0.52
TCOF1-207ENST00000504761 OR4C13Q8NGP0 309 aa11.79□□□□□ -0.52
TCOF1-207ENST00000504761 IL22RA2Q969J5 263 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms