RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 LYRM2Q9NU23 88 aaPredicted RBP6.89□□□□□ -1.31
SF3A1-210ENST00000498259 BET1LQ9NYM9 111 aa6.89□□□□□ -1.31
SF3A1-210ENST00000498259 HSPB7Q9UBY9 170 aa6.89□□□□□ -1.31
SF3A1-210ENST00000498259 UBQLN2Q9UHD9 624 aa6.89□□□□□ -1.31
SF3A1-210ENST00000498259 ZNF257Q9Y2Q1 563 aa6.89□□□□□ -1.31
SF3A1-210ENST00000498259 U3KQ87 197 aa6.89□□□□□ -1.31
SF3A1-210ENST00000498259 UBR5O95071 2799 aaPredicted RBP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 TRAV20A0A0B4J274 112 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 CEBPZOSA8MTT3 80 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 KIAA1324LA8MWY0 1029 aaPredicted RBP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 VWC2LB2RUY7 222 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 H0YJW9 148 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 PROP1O75360 226 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 ACTL6BO94805 426 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 CXCL2P19875 107 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 COX7A1P24310 79 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 BRS3P32247 399 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 UBE2E1P51965 193 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 RPS16P62249 146 aaKnown RBP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 POLR2GP62487 172 aaKnown RBP eCLIP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 DEFB113Q30KQ7 82 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 AARDQ4LEZ3 155 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 PDLIM3Q53GG5 364 aaPredicted RBP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 TMEM177Q53S58 311 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 CXorf66Q5JRM2 361 aaPredicted RBP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 FAM53AQ6NSI3 398 aaPredicted RBP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 VMO1Q7Z5L0 202 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 MOB3BQ86TA1 216 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 TEX29Q8N6K0 151 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 OR5B3Q8NH48 314 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 MALSU1Q96EH3 234 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 PSMG3-AS1Q96PY0 264 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 NABP2Q9BQ15 211 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 ZNF471Q9BX82 626 aaPredicted RBP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 MRPL20Q9BYC9 149 aaKnown RBP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 COMMD5Q9GZQ3 224 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 MS4A7Q9GZW8 240 aaPredicted RBP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 TMEM140Q9NV12 185 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 PSENENQ9NZ42 101 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 OR5AC2Q9NZP5 309 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 FOXA2Q9Y261 457 aaPredicted RBP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 RCL1Q9Y2P8 373 aaKnown RBP6.88□□□□□ -1.31
SF3A1-210ENST00000498259 RELNP78509 3460 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 MYO18BQ8IUG5 2567 aa6.88□□□□□ -1.31
SF3A1-210ENST00000498259 IGHV1-3A0A0C4DH29 117 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 RNF222A6NCQ9 220 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 H0YIZ8 118 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 SPDEFO95238 335 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 MSMBP08118 114 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 P0C879 139 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 FAM106CPP0CH98 169 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 HKR1P10072 659 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 CD1BP29016 333 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 MAS1LP35410 378 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 SULT1A1P50225 295 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 F2RL1P55085 397 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 BPIFB3P59826 476 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 RAB11AP62491 216 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 ATP6V1FQ16864 119 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 TPTE2P1Q5T6R2 138 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 OR4A47Q6IF82 309 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 Q8N7P7 452 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 TEX45Q8NA69 505 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 OR4P4Q8NGL7 312 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 STOML3Q8TAV4 291 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 PINX1Q96BK5 328 aaKnown RBP6.87□□□□□ -1.31
SF3A1-210ENST00000498259 C5orf30Q96GV9 206 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 PLSCR3Q9NRY6 295 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 STRAPQ9Y3F4 350 aaKnown RBP6.87□□□□□ -1.31
SF3A1-210ENST00000498259 FAM208BQ5VWN6 2430 aa6.87□□□□□ -1.31
SF3A1-210ENST00000498259 A0A1W2PN81 502 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 C15orf61A6NNL5 157 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 J3QLI3 93 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 KBTBD11O94819 623 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 IFNA5P01569 189 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 ZFP36P26651 326 aaKnown RBP6.86□□□□□ -1.31
SF3A1-210ENST00000498259 CHRNA7P36544 502 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 REG1BP48304 166 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 COMPP49747 757 aaPredicted RBP6.86□□□□□ -1.31
SF3A1-210ENST00000498259 SUB1P53999 127 aaKnown RBP eCLIP6.86□□□□□ -1.31
SF3A1-210ENST00000498259 BRWD1-AS2P59051 145 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 HSPE1P61604 102 aaKnown RBP6.86□□□□□ -1.31
SF3A1-210ENST00000498259 ERHP84090 104 aaKnown RBP6.86□□□□□ -1.31
SF3A1-210ENST00000498259 PAX2Q02962 417 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 PAX8Q06710 450 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 SLC25A24Q6NUK1 477 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 Q6ZRM9 215 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 SSX9Q7RTT3 188 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 HSD17B13Q7Z5P4 300 aaPredicted RBP6.86□□□□□ -1.31
SF3A1-210ENST00000498259 BAP18Q8IXM2 172 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 MMD2Q8IY49 270 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 PUSL1Q8N0Z8 303 aaKnown RBP6.86□□□□□ -1.31
SF3A1-210ENST00000498259 TMEM252Q8N6L7 170 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 LINC01356Q8N9X3 169 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 UBAC2Q8NBM4 344 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 ZNF680Q8NEM1 530 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 OR10P1Q8NGE3 313 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 OR1S2Q8NGQ3 325 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 DTD1Q8TEA8 209 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 SCARB1Q8WTV0 552 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms