RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 CT45A7P0DMV0 189 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 RAB6AP20340 208 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 TNFSF8P32971 234 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 SCAND1P57086 179 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 TATDN3Q17R31 274 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 PLAC9Q5JTB6 97 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 ZNF343Q6P1L6 599 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 TRAT1Q6PIZ9 186 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 GLDNQ6ZMI3 551 aaPredicted RBP12.36□□□□□ -0.43
VIM-208ENST00000497849 SAMD12Q8N8I0 201 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 SLC25A38Q96DW6 304 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 ARHGAP5-AS1Q96IT6 56 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 NEDD4LQ96PU5 975 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 YPEL2Q96QA6 119 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 MIXL1Q9H2W2 232 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 IFI27L2Q9H2X8 130 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 AKIP1Q9NQ31 210 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 MBNL3Q9NUK0 354 aaKnown RBP12.36□□□□□ -0.43
VIM-208ENST00000497849 METTL1Q9UBP6 276 aaKnown RBP12.36□□□□□ -0.43
VIM-208ENST00000497849 KLK5Q9Y337 293 aaPredicted RBP12.36□□□□□ -0.43
VIM-208ENST00000497849 ETV7Q9Y603 341 aa12.36□□□□□ -0.43
VIM-208ENST00000497849 FAM90A7PA6NKC0 464 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 FAM90A23PA8MXZ1 464 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 FAM25AB3EWG3 89 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 FAM25CB3EWG5 89 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 FAM25GB3EWG6 89 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 RAB27BO00194 218 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 SSBP2P81877 361 aaPredicted RBP12.35□□□□□ -0.43
VIM-208ENST00000497849 TNFRSF9Q07011 255 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 ZNF846Q147U1 533 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 PSG5Q15238 335 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 RPEL1Q2QD12 228 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 SPANXN2Q5MJ10 180 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 LY6G6FQ5SQ64 297 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 CMTM3Q96MX0 182 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 PECRQ9BY49 303 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 WDR12Q9GZL7 423 aaKnown RBP12.35□□□□□ -0.43
VIM-208ENST00000497849 PARP12Q9H0J9 701 aaKnown RBP12.35□□□□□ -0.43
VIM-208ENST00000497849 RHBDL2Q9NX52 303 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 ELF5Q9UKW6 265 aaPredicted RBP12.35□□□□□ -0.43
VIM-208ENST00000497849 DNAH11Q96DT5 4516 aa12.35□□□□□ -0.43
VIM-208ENST00000497849 OR5H14A6NHG9 310 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 H0YJW9 148 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 GSTP1P09211 210 aaKnown RBP12.34□□□□□ -0.43
VIM-208ENST00000497849 HTD2P86397 168 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 FXYD3Q14802 87 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 RPL39P5Q59GN2 51 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 UBE2NLQ5JXB2 153 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 FAM71F2Q6NXP2 309 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 LYG2Q86SG7 212 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 CCDC190Q86UF4 302 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 MFSD4AQ8N468 514 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 OR56B1Q8NGI3 324 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 OR10R2Q8NGX6 335 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 GRPEL2Q8TAA5 225 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 PTX4Q96A99 478 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 DIRAS2Q96HU8 199 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 HDHD3Q9BSH5 251 aaPredicted RBP12.34□□□□□ -0.43
VIM-208ENST00000497849 SPACA1Q9HBV2 294 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 PLEKHJ1Q9NW61 149 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 PEMTQ9UBM1 199 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 DNAH17Q9UFH2 4485 aa12.34□□□□□ -0.43
VIM-208ENST00000497849 METTL21EPA6NDL7 271 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 RBMXL2O75526 392 aaKnown RBP12.33□□□□□ -0.44
VIM-208ENST00000497849 RBBP9O75884 186 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 APOA1P02647 267 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 EIF4EP06730 217 aaKnown RBP12.33□□□□□ -0.44
VIM-208ENST00000497849 GNB3P16520 340 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 ELK1P19419 428 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 ETV6P41212 452 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 PRR20EP86478 221 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 PRR20CP86479 221 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 PRR20DP86480 221 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 PRR20BP86481 221 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 PRR20AP86496 221 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 ZNF45Q02386 682 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 DEFB114Q30KQ6 69 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 CNIH2Q6PI25 160 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 WFDC3Q8IUB2 231 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 BVESQ8NE79 360 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 OR2AK2Q8NG84 335 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 RAB3CQ96E17 227 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 RNF5Q99942 180 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 TINAGL1Q9GZM7 467 aaPredicted RBP12.33□□□□□ -0.44
VIM-208ENST00000497849 ZC4H2Q9NQZ6 224 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 AK3Q9UIJ7 227 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 KCNK7Q9Y2U2 307 aa12.33□□□□□ -0.44
VIM-208ENST00000497849 TRAV18A0A075B6X5 111 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 FABP12A6NFH5 140 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 H7C2Y5 167 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 ST8SIA5O15466 376 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 EDN2P20800 178 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 AADACP22760 399 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 MC5RP33032 325 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 TALDO1P37837 337 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 GUCA2BQ16661 112 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 CDNFQ49AH0 187 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 ZNF554Q86TJ5 538 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 OR5AN1Q8NGI8 311 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 MRPL30Q8TCC3 161 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms