RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 FKBP1AP62942 108 aaKnown RBP0.95□□□□□ -2.26
VPS50-219ENST00000495039 MIAQ16674 131 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 PLPPR5Q32ZL2 321 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 ZNF705AQ6ZN79 300 aaPredicted RBP0.95□□□□□ -2.26
VPS50-219ENST00000495039 RASSF6Q6ZTQ3 369 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 NAA40Q86UY6 237 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 OR1L8Q8NGR8 309 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 RAB2BQ8WUD1 216 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 ATP6V1G3Q96LB4 118 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 PACRGQ96M98 296 aaPredicted RBP0.95□□□□□ -2.26
VPS50-219ENST00000495039 C7orf50Q9BRJ6 194 aaKnown RBP0.95□□□□□ -2.26
VPS50-219ENST00000495039 HES4Q9HCC6 221 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 NUP160Q12769 1436 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 RAD50Q92878 1312 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 PTPRBP23467 1997 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 TMED7-TICAM2A0A0A6YYA0 188 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 IGKV1D-43A0A0B4J1Z2 117 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 TRBV6-5A0A0K0K1A5 114 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 TINCRA0A1B0GVN0 87 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 HMSDA8MTL9 139 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 CALUO43852 315 aaPredicted RBP0.94□□□□□ -2.26
VPS50-219ENST00000495039 CREBL2O60519 120 aaPredicted RBP0.94□□□□□ -2.26
VPS50-219ENST00000495039 UGT2B7P16662 529 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 CD40LGP29965 261 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 AKR1C3P42330 323 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 SLCO1A2P46721 670 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 CXCR4P61073 352 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 JOSD1Q15040 202 aaPredicted RBP0.94□□□□□ -2.26
VPS50-219ENST00000495039 SLC36A2Q495M3 483 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 SAPCD1Q5SSQ6 148 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 GPHB5Q86YW7 130 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 C10orf105Q8TEF2 133 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 SMIM19Q96E16 107 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 CCL13Q99616 98 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 DERL2Q9GZP9 239 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 CYSTM1Q9H1C7 97 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 EURLQ9NYK6 297 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 FLG2Q5D862 2391 aaPredicted RBP0.94□□□□□ -2.26
VPS50-219ENST00000495039 CPAMD8Q8IZJ3 1885 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 ABCC12Q96J65 1359 aa0.94□□□□□ -2.26
VPS50-219ENST00000495039 PTPRSQ13332 1948 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 A0A0J9YW62 118 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 FABP12A6NFH5 140 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 M0QX08 132 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 BIRC5O15392 142 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 APOMO95445 188 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 CRPP02741 224 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 SERPINA7P05543 415 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 DDTP30046 118 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 CDC34P49427 236 aaPredicted RBP0.93□□□□□ -2.26
VPS50-219ENST00000495039 AKR1C1Q04828 323 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 NNATQ16517 81 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 PLEKHG7Q6ZR37 379 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 UBL4BQ8N7F7 174 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 EEF1AKMT1Q8WVE0 214 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 DNAJB3Q8WWF6 145 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 ZNF514Q96K75 400 aaPredicted RBP0.93□□□□□ -2.26
VPS50-219ENST00000495039 IMMP2LQ96T52 175 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 RBM7Q9Y580 266 aaKnown RBP0.93□□□□□ -2.26
VPS50-219ENST00000495039 SOX21Q9Y651 276 aaPredicted RBP0.93□□□□□ -2.26
VPS50-219ENST00000495039 GMEB1Q9Y692 573 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 FLT4P35916 1363 aa0.93□□□□□ -2.26
VPS50-219ENST00000495039 NUMA1Q14980 2115 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 KIAA2026Q5HYC2 2103 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 MYH11P35749 1972 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 IGKV2-40A0A087WW87 121 aaPredicted RBP0.92□□□□□ -2.26
VPS50-219ENST00000495039 TRAV38-1A0A0B4J264 116 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 IGHV1-18A0A0C4DH31 117 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 A0A1B0GW54 56 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 H7C2G1 150 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 COX7A2LO14548 114 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 CIAO1O76071 339 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 IGKV2D-40P01614 121 aaPredicted RBP0.92□□□□□ -2.26
VPS50-219ENST00000495039 LGALS1P09382 135 aaKnown RBP0.92□□□□□ -2.26
VPS50-219ENST00000495039 UBE2G2P60604 165 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 HIST1H4AP62805 103 aaKnown RBP0.92□□□□□ -2.26
VPS50-219ENST00000495039 LRRC75BQ2VPJ9 315 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 SLC36A1Q7Z2H8 476 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 HAVCR2Q8TDQ0 301 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 GNPNAT1Q96EK6 184 aaPredicted RBP0.92□□□□□ -2.26
VPS50-219ENST00000495039 Q96M85 177 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 KCTD7Q96MP8 289 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 RETNLBQ9BQ08 111 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 UPF3BQ9BZI7 483 aaKnown RBP0.92□□□□□ -2.26
VPS50-219ENST00000495039 HRASLSQ9HDD0 168 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 ANGPT4Q9Y264 503 aa0.92□□□□□ -2.26
VPS50-219ENST00000495039 TRAV7A0A075B6U4 112 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 IGKV3D-7A0A0C4DH55 119 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 IGKV3OR2-268A0A0C4DH90 116 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 TMEM269A0A1B0GVZ9 245 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 H3BT86 120 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 DEFA4P12838 97 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 G6PCP35575 357 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 RPL28P46779 137 aaKnown RBP0.91□□□□□ -2.26
VPS50-219ENST00000495039 AQP4P55087 323 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 RAB14P61106 215 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 SKP1P63208 163 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 MGAT3Q09327 533 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 C9orf64Q5T6V5 341 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 TNFAIP8L2Q6P589 184 aaPredicted RBP0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms