RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 RAB24Q969Q5 203 aa13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 SARAFQ96BY9 339 aa13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 J3QW42 95 aa13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 GZMBP10144 247 aa13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 FAM201AQ5SY85 155 aa13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 MRGPRGQ86SM5 289 aa13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 ZNF664Q8N3J9 261 aa13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 CD177Q8N6Q3 437 aa13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 LSM10Q969L4 123 aaKnown RBP13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 OR5B12Q96R08 314 aa13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 PSG11Q9UQ72 335 aa13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 TMEM210A6NLX4 147 aa13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 GATCO43716 136 aaKnown RBP13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 G0S2P27469 103 aa13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 ZNF645Q8N7E2 425 aa13.77□□□□□ -0.21
CCDC88B-210ENST00000494566 LINC00473A8K010 186 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 K7EM74 188 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 SPINK4O60575 86 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 GYPAP02724 150 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 PSMB3P49720 205 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 TNFRSF9Q07011 255 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 Q3ZCU0 254 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 NINJ1Q92982 152 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 YLPM1P49750 1951 aaKnown RBP13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 CEP295Q9C0D2 2601 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 GRIFINA4D1Z8 144 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 C1QTNF9P0C862 333 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 ZNF718Q3SXZ3 478 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 OR1P1Q8NH06 330 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 LEAP2Q969E1 77 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 ZNF71Q9NQZ8 489 aaPredicted RBP13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 PROCRQ9UNN8 238 aa13.76□□□□□ -0.21
CCDC88B-210ENST00000494566 NPPCP23582 126 aa13.75□□□□□ -0.21
CCDC88B-210ENST00000494566 UTF1Q5T230 341 aa13.75□□□□□ -0.21
CCDC88B-210ENST00000494566 IGFL2Q6UWQ7 119 aa13.75□□□□□ -0.21
CCDC88B-210ENST00000494566 ZNF114Q8NC26 417 aa13.75□□□□□ -0.21
CCDC88B-210ENST00000494566 NAT8Q9UHE5 227 aa13.75□□□□□ -0.21
CCDC88B-210ENST00000494566 PTPRBP23467 1997 aa13.75□□□□□ -0.21
CCDC88B-210ENST00000494566 M0R1B8 84 aa13.75□□□□□ -0.21
CCDC88B-210ENST00000494566 CD82P27701 267 aa13.75□□□□□ -0.21
CCDC88B-210ENST00000494566 BHLHA15Q7RTS1 189 aaPredicted RBP13.75□□□□□ -0.21
CCDC88B-210ENST00000494566 OOEPA6NGQ2 149 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 SCGB1D1O95968 90 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 OPN1MWP04001 364 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 OPN1MW2P0DN77 364 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 OPN1MW3P0DN78 364 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 SELLP14151 372 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 PRR31Q5SQ13 230 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 TMEM256Q8N2U0 113 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 PLSCR4Q9NRQ2 329 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 ZNF320A2RRD8 509 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 NDUFB4O95168 129 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 IFNA1P01562 189 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 SLC25A6P12236 298 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 TGIF2LXQ8IUE1 241 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 ZNRF1Q8ND25 227 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 SNIP1Q8TAD8 396 aaKnown RBP13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 MBD3L1Q8WWY6 194 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 IMMP2LQ96T52 175 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 ZGRF1Q86YA3 2104 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 APC2O95996 2303 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 MUC6Q6W4X9 2439 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 NUPR1O60356 82 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 IFNA10P01566 189 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 PFN1P07737 140 aaKnown RBP13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 SLC35E4Q6ICL7 350 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 DTD1Q8TEA8 209 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 SSMEM1Q8WWF3 244 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 CBLN4Q9NTU7 201 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 PITPNC1Q9UKF7 332 aa13.74□□□□□ -0.21
CCDC88B-210ENST00000494566 C11orf94C9JXX5 98 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 PKIAP61925 76 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 ZNF709Q8N972 641 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 DSCAMO60469 2012 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 ELOA3CA0A087WX78 387 aaPredicted RBP13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 EREGO14944 169 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 SPRY3O43610 288 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 KBTBD11O94819 623 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 CGAP01215 116 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 RND2P52198 227 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 PNRC1Q12796 327 aaPredicted RBP13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 TMEM183AQ8IXX5 376 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 OR10P1Q8NGE3 313 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 HINT2Q9BX68 163 aa13.73□□□□□ -0.21
CCDC88B-210ENST00000494566 PLXNB1O43157 2135 aa13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 B4DEV8 164 aa13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 PRDX2P32119 198 aa13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 SMIM21Q3B7S5 101 aa13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 C22orf34Q6ZV56 151 aa13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 QTRT1Q9BXR0 403 aaKnown RBP13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 IGKV1D-17A0A075B6S4 117 aa13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 IGLV1-44P01699 117 aa13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 FRMD6-AS1P0C7T7 363 aa13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 KITLGP21583 273 aa13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 NUBP1P53384 320 aa13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 DUX4L9Q6RFH8 374 aaPredicted RBP13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 ZNF474Q6S9Z5 364 aaPredicted RBP13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 H2BFWTQ7Z2G1 175 aa13.72□□□□□ -0.21
CCDC88B-210ENST00000494566 TRAV1-1A0A0B4J248 108 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms