RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 URGCP-MRPS24S4R325 110 aa4.86□□□□□ -1.63
VPS41-214ENST00000490924 CFAP47Q6ZTR5 3102 aa4.86□□□□□ -1.63
VPS41-214ENST00000490924 NCOR1O75376 2440 aa4.86□□□□□ -1.63
VPS41-214ENST00000490924 EML6Q6ZMW3 1958 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 ZFHX2Q9C0A1 2572 aaPredicted RBP4.85□□□□□ -1.63
VPS41-214ENST00000490924 A0A087X0M5 115 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 UBE2L5PA0A1B0GUS4 154 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 A0A1B0GX30 115 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 ODAMA1E959 279 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 HS3ST1O14792 307 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 SPINT2O43291 252 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 SMPD2O60906 423 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 WDR1O75083 606 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 MMP23AO75900 390 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 HAND1O96004 215 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 HPRT1P00492 218 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 NGFP01138 241 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 MT-ND6P03923 174 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 OR10J4P0C629 311 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 GZMHP20718 246 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 CDC34P49427 236 aaPredicted RBP4.85□□□□□ -1.63
VPS41-214ENST00000490924 PPP1CBP62140 327 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 RANP62826 216 aaKnown RBP4.85□□□□□ -1.63
VPS41-214ENST00000490924 COL10A1Q03692 680 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 TCF15Q12870 199 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 GAMTQ14353 236 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 SLC10A1Q14973 349 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 GUSBP1Q15486 140 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 ADIRFQ15847 76 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 POU2AF1Q16633 256 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 SMIM21Q3B7S5 101 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 C3orf36Q3SXR2 165 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 Q3ZCU0 254 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 SPANXN5Q5MJ07 72 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 CYB5R2Q6BCY4 276 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 C16orf82Q7Z2V1 217 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 P4HA3Q7Z4N8 544 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 LINC01551Q86U37 167 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 ZNF575Q86XF7 245 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 GBGT1Q8N5D6 347 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 TMEM251Q8N6I4 163 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 SCCPDHQ8NBX0 429 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 MDS2Q8NDY4 140 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 PPP1R35Q8TAP8 253 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 RDH5Q92781 318 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 RPUSD4Q96CM3 377 aaKnown RBP4.85□□□□□ -1.63
VPS41-214ENST00000490924 SNX22Q96L94 193 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 FER1L6-AS2Q96M78 137 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 CXXC4Q9H2H0 198 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 ZDHHC11Q9H8X9 412 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 MSL2Q9HCI7 577 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 PPP1R14DQ9NXH3 145 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 OR1A1Q9P1Q5 309 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 JPT1Q9UK76 154 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 LOXL2Q9Y4K0 774 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 RBM7Q9Y580 266 aaKnown RBP4.85□□□□□ -1.63
VPS41-214ENST00000490924 DNAH14Q0VDD8 3507 aa4.85□□□□□ -1.63
VPS41-214ENST00000490924 KIR2DL5BA0A0G2JN68 375 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 KIR2DL5BA0A0G2JPC4 375 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 A0A1B0GV50 99 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 A0A1W2PR80 420 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 MED19A0JLT2 244 aaPredicted RBP4.84□□□□□ -1.63
VPS41-214ENST00000490924 XKRY2A2RUG3 117 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 PINLYPA6NC86 204 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 MARCH11A6NNE9 402 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 C12orf77C9JDV5 145 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 C11orf94C9JXX5 98 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 H3BP45 60 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 F2RL2O00254 374 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 TNFSF12O43508 249 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 YPEL1O60688 119 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 CXorf1O96002 111 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 MT-CO3P00414 261 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 IGKV1D-33P01593 117 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 IGKV1-33P01594 117 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 IGKV3-15P01624 115 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 REG1AP05451 166 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 STAG3L2P0CL84 134 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 STAG3L3P0CL85 134 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 IAPPP10997 89 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 RAB4AP20338 218 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 CA6P23280 308 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 OTX2P32243 289 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 RAB7AP51149 207 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 CNN1P51911 297 aaKnown RBP4.84□□□□□ -1.63
VPS41-214ENST00000490924 CEBPGP53567 150 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 RPL15P61313 204 aaKnown RBP4.84□□□□□ -1.63
VPS41-214ENST00000490924 RAB31Q13636 194 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 PDCD1Q15116 288 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 TRIP6Q15654 476 aaKnown RBP4.84□□□□□ -1.63
VPS41-214ENST00000490924 C9orf152Q5JTZ5 239 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 FFAR4Q5NUL3 377 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 DCAF10Q5QP82 559 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 C1orf194Q5T5A4 169 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 MBNL2Q5VZF2 373 aaKnown RBP4.84□□□□□ -1.63
VPS41-214ENST00000490924 ACSM6Q6P461 480 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 TOMM20LQ6UXN7 152 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 Q6ZT83 130 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 SSX7Q7RTT5 188 aa4.84□□□□□ -1.63
VPS41-214ENST00000490924 H2BFWTQ7Z2G1 175 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms