RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 A0A087WUU8 490 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 MUC21A0A0G2JKD1 596 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 A0A0G2JQZ4 141 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 MUC21A0A140T8X8 626 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 KNCNA6PVL3 124 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 A8MUN3 132 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 LY6LH3BQJ8 138 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 LST1O00453 97 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 AHSA1O95433 338 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 APOMO95445 188 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 IGHV1-69P01742 117 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 PRB1P04280 392 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 CALB1P05937 261 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 KRT7P08729 469 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 ZNF728P0DKX0 622 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 P0DMU3 169 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 FAM231AP0DMU4 169 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 FAM231CP0DMU5 169 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 GZMBP10144 247 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 HIST1H1EP10412 219 aaKnown RBP0.86□□□□□ -2.27
CPSF3-205ENST00000489629 CCR7P32248 378 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 CD200P41217 278 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 EBPQ15125 230 aaKnown RBP0.86□□□□□ -2.27
CPSF3-205ENST00000489629 IMPG1Q17R60 797 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 TPRXLQ17RH7 258 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 ACSM3Q53FZ2 586 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 TNFAIP8L3Q5GJ75 292 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 CHCHD2P9Q5T1J5 151 aaPredicted RBP0.86□□□□□ -2.27
CPSF3-205ENST00000489629 SYPL2Q5VXT5 272 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 MNS1Q8NEH6 495 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 OR1M1Q8NGA1 313 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 OR2D3Q8NGH3 330 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 CLDND2Q8NHS1 167 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 ASB17Q8WXJ9 295 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 MS4A6EQ96DS6 147 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 DNAJC30Q96LL9 226 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 CCL13Q99616 98 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 PECRQ9BY49 303 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 TTTY12Q9BZ98 90 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 TXNL4BQ9NX01 149 aaKnown RBP0.86□□□□□ -2.27
CPSF3-205ENST00000489629 CMTM6Q9NX76 183 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 KLK5Q9Y337 293 aaPredicted RBP0.86□□□□□ -2.27
CPSF3-205ENST00000489629 RBM7Q9Y580 266 aaKnown RBP0.86□□□□□ -2.27
CPSF3-205ENST00000489629 PXMP4Q9Y6I8 212 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 CCDC88CQ9P219 2028 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 A0A1W2PQD3 144 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 A0A1W2PQL4 384 aaPredicted RBP0.85□□□□□ -2.27
CPSF3-205ENST00000489629 H3BPC8 53 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 OVOL1O14753 267 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 ACOX3O15254 700 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 PLA2G10O15496 165 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 GNRH2O43555 120 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 TRAPPC3O43617 180 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 S1PR2O95136 353 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 NSA2O95478 260 aaKnown RBP0.85□□□□□ -2.27
CPSF3-205ENST00000489629 APOEP02649 317 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 SERPINA6P08185 405 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 TFPTP0C1Z6 253 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 DEFA4P12838 97 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 CCL5P13501 91 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 ATP6V0CP27449 155 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 DDTP30046 118 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 XCL1P47992 114 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 ZNF140P52738 457 aaPredicted RBP0.85□□□□□ -2.27
CPSF3-205ENST00000489629 RBM11P57052 281 aaKnown RBP0.85□□□□□ -2.27
CPSF3-205ENST00000489629 TAS2R30P59541 319 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 LSM6P62312 80 aaKnown RBP0.85□□□□□ -2.27
CPSF3-205ENST00000489629 EMX1Q04741 257 aaPredicted RBP0.85□□□□□ -2.27
CPSF3-205ENST00000489629 PLPPR5Q32ZL2 321 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 OGFRL1Q5TC84 451 aaPredicted RBP0.85□□□□□ -2.27
CPSF3-205ENST00000489629 FAM78BQ5VT40 261 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 HIST2H3AQ71DI3 136 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 DCXRQ7Z4W1 244 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 DEFB125Q8N687 156 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 SMCR5Q8TEV8 140 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 ITFG2Q969R8 447 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 DIRAS2Q96HU8 199 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 SLC35G5Q96KT7 338 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 ERMAPQ96PL5 475 aaPredicted RBP0.85□□□□□ -2.27
CPSF3-205ENST00000489629 CXCL16Q9H2A7 254 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 REREQ9P2R6 1566 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 PKIGQ9Y2B9 76 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 AMMECR1Q9Y4X0 333 aaPredicted RBP0.85□□□□□ -2.27
CPSF3-205ENST00000489629 FAM215AQ9Y5M1 114 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 HECW1Q76N89 1606 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 PLB1Q6P1J6 1458 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 PCDH15Q96QU1 1955 aa0.85□□□□□ -2.27
CPSF3-205ENST00000489629 ZNF106Q9H2Y7 1883 aaKnown RBP0.84□□□□□ -2.27
CPSF3-205ENST00000489629 C9orf84Q5VXU9 1444 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 UBE2L6O14933 153 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 E2F6O75461 281 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 RPS17P08708 135 aaKnown RBP0.84□□□□□ -2.27
CPSF3-205ENST00000489629 FGF6P10767 208 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 IFI30P13284 250 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 ALOX5APP20292 161 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 CCR2P41597 374 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 GABRA2P47869 451 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 AP2S1P53680 142 aaPredicted RBP0.84□□□□□ -2.27
CPSF3-205ENST00000489629 RAB5BP61020 215 aa0.84□□□□□ -2.27
CPSF3-205ENST00000489629 TBPL1P62380 186 aa0.84□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms