RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 UBE2IP63279 158 aaKnown RBP2.09□□□□□ -2.07
USP48-209ENST00000487880 SLAMF1Q13291 335 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 GPR176Q14439 515 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 HNRNPA1L2Q32P51 320 aaKnown RBP2.09□□□□□ -2.07
USP48-209ENST00000487880 PABPC1L2AQ5JQF8 200 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 HACD4Q5VWC8 232 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 LAMTOR1Q6IAA8 161 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 C5orf46Q6UWT4 87 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 TMPPEQ6ZT21 453 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 ZNF720Q7Z2F6 126 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 COMMD7Q86VX2 200 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 C10orf107Q8IVU9 208 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 C9orf62Q8N4C0 152 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 TBC1D19Q8N5T2 526 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 YIPF7Q8N8F6 280 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 ZNF565Q8N9K5 539 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 OR1M1Q8NGA1 313 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 CDC26Q8NHZ8 85 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 MITD1Q8WV92 249 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 MSANTD3Q96H12 275 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 CCDC115Q96NT0 180 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 OR52B2Q96RD2 323 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 PDCD10Q9BUL8 212 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 HIGD2AQ9BW72 106 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 MND1Q9BWT6 205 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 ZNF436Q9C0F3 470 aaPredicted RBP2.09□□□□□ -2.07
USP48-209ENST00000487880 GABARAPL1Q9H0R8 117 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 SYT4Q9H2B2 425 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 C11orf49Q9H6J7 331 aa2.09□□□□□ -2.07
USP48-209ENST00000487880 CHTOPQ9Y3Y2 248 aaKnown RBP2.09□□□□□ -2.07
USP48-209ENST00000487880 SLX4Q8IY92 1834 aa2.09□□□□□ -2.08
USP48-209ENST00000487880 DDX60LQ5H9U9 1706 aaKnown RBP2.08□□□□□ -2.08
USP48-209ENST00000487880 CDK5RAP2Q96SN8 1893 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 GLI3P10071 1580 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 G3V2T6 193 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 AIPO00170 330 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 PHYHO14832 338 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 UBDO15205 165 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 CST8O60676 142 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 SC5DO75845 299 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 IFNA10P01566 189 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 IFNGP01579 166 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 TNNC2P02585 160 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 FABP1P07148 127 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 SOD3P08294 240 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 FBP1P09467 338 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 SLC2A1P11166 492 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 SPNP16150 400 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 MYL12AP19105 171 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 KDELR1P24390 212 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 PSMB9P28065 219 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 ELK4P28324 431 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 NCS1P62166 190 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 GUSBP1Q15486 140 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 SPANXN3Q5MJ09 141 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 NXNL2Q5VZ03 156 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 C3orf33Q6P1S2 294 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 ERICH5Q6P6B1 374 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 CYHR1Q6ZMK1 362 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 ZCCHC23Q6ZST2 131 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 FAM183BPQ6ZVS7 135 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 PID1Q7Z2X4 250 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 FAM9CQ8IZT9 166 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 SYS1Q8N2H4 156 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 CLDN22Q8N7P3 220 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 ZNF738Q8NE65 137 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 OR5K1Q8NHB7 308 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 CLHC1Q8NHS4 586 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 SPPL2BQ8TCT7 592 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 ASB13Q8WXK3 278 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 FMC1Q96HJ9 113 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 ERMAPQ96PL5 475 aaPredicted RBP2.08□□□□□ -2.08
USP48-209ENST00000487880 TRNT1Q96Q11 434 aaKnown RBP2.08□□□□□ -2.08
USP48-209ENST00000487880 PITX2Q99697 317 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 MRPL57Q9BQC6 102 aaKnown RBP2.08□□□□□ -2.08
USP48-209ENST00000487880 MED18Q9BUE0 208 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 ALX4Q9H161 411 aaPredicted RBP2.08□□□□□ -2.08
USP48-209ENST00000487880 POMKQ9H5K3 350 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 SDHAF2Q9NX18 166 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 BABAM2Q9NXR7 383 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 DNAJC27Q9NZQ0 273 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 COPZ2Q9P299 210 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 SLC22A14Q9Y267 594 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 BTRCQ9Y297 605 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 HSPB11Q9Y547 144 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 KIAA1551Q9HCM1 1747 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 RGPD2P0DJD1 1756 aa2.08□□□□□ -2.08
USP48-209ENST00000487880 SIPA1L1O43166 1804 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 CACNA1SQ13698 1873 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 FER1L6Q2WGJ9 1857 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 OTOGLQ3ZCN5 2332 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 IGKV1D-37A0A075B6S9 117 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 RBFOX3A6NFN3 312 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 LINC00587B1AMM8 73 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 FXYD1O00168 92 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 MPZL2O60487 215 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 BANF1O75531 89 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 CTSGP08311 255 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 PIPP12273 146 aaPredicted RBP2.07□□□□□ -2.08
USP48-209ENST00000487880 CA5AP35218 305 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms