RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 MDN1Q9NU22 5596 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 ATAD5Q96QE3 1844 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 CCDC88CQ9P219 2028 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 GPR98Q8WXG9 6306 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 ZNF638Q14966 1978 aaKnown RBP0.46□□□□□ -2.34
VPS50-216ENST00000484954 SCN9AQ15858 1988 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 IGHV1-18A0A0C4DH31 117 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 PLA2G10O15496 165 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 STX10O60499 249 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 APOMO95445 188 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 IL3P08700 152 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 UCHL1P09936 223 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 DEFA4P12838 97 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 CCL1P22362 96 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 REG1BP48304 166 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 CD151P48509 253 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 FXYD7P58549 80 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 CXCR4P61073 352 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 ERHP84090 104 aaKnown RBP0.46□□□□□ -2.34
VPS50-216ENST00000484954 RELAQ04206 551 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 EBPQ15125 230 aaKnown RBP0.46□□□□□ -2.34
VPS50-216ENST00000484954 PLPPR5Q32ZL2 321 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 TMEM155Q4W5P6 130 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 ACSM3Q53FZ2 586 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 TNFAIP8L3Q5GJ75 292 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 PDPK2PQ6A1A2 396 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 TMEM251Q8N6I4 163 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 OR8B12Q8NGG6 310 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 OR13C8Q8NGS7 320 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 RAB2BQ8WUD1 216 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 EEF1AKMT1Q8WVE0 214 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 GNPNAT1Q96EK6 184 aaPredicted RBP0.46□□□□□ -2.34
VPS50-216ENST00000484954 CFAP53Q96M91 514 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 KCTD7Q96MP8 289 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 IMMP2LQ96T52 175 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 NMNAT3Q96T66 252 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 CCL13Q99616 98 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 TIPINQ9BVW5 301 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 CYSTM1Q9H1C7 97 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 HRASLSQ9HDD0 168 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 DOK5Q9P104 306 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 RTTNQ86VV8 2226 aa0.46□□□□□ -2.34
VPS50-216ENST00000484954 DENND4BO75064 1496 aaPredicted RBP0.46□□□□□ -2.34
VPS50-216ENST00000484954 KIF15Q9NS87 1388 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 MYO5BQ9ULV0 1848 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 A0A0J9YW62 118 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 EVPLLA8MZ36 301 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 GOLGA8KD6RF30 607 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 GOLGA8MH3BSY2 632 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 TXNDC9O14530 226 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 COX7A2LO14548 114 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 CIAO1O76071 339 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 RPL28P46779 137 aaKnown RBP0.45□□□□□ -2.34
VPS50-216ENST00000484954 AQP4P55087 323 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 CTAG1AP78358 180 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 GLO1Q04760 184 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 PPP1R1AQ13522 171 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 Q1T7F1 81 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 LRRC75BQ2VPJ9 315 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 LYZL1Q6UWQ5 148 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 PLEKHG7Q6ZR37 379 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 SLC35E3Q7Z769 313 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 UMODL1-AS1Q8N2C9 162 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 C15orf53Q8NAA6 179 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 TMEM161BQ8NDZ6 487 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 OR2T27Q8NH04 317 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 HAVCR2Q8TDQ0 301 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 CMTM5Q96DZ9 223 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 DCUN1D5Q9BTE7 237 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 MAP1LC3AQ9H492 121 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 SPANXB1Q9NS25 103 aaPredicted RBP0.45□□□□□ -2.34
VPS50-216ENST00000484954 BABAM2Q9NXR7 383 aa0.45□□□□□ -2.34
VPS50-216ENST00000484954 NYNRINQ9P2P1 1898 aaKnown RBP0.45□□□□□ -2.34
VPS50-216ENST00000484954 BAZ2BQ9UIF8 2168 aaKnown RBP0.45□□□□□ -2.34
VPS50-216ENST00000484954 DISP1Q96F81 1524 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 GRIN2BQ13224 1484 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 TRAV7A0A075B6U4 112 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 A0A0D9SEW6 157 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 TMEM269A0A1B0GVZ9 245 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 H3BT86 120 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 H7C2G1 150 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 LST1O00453 97 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 NSA2O95478 260 aaKnown RBP0.44□□□□□ -2.34
VPS50-216ENST00000484954 TYMSP04818 313 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 LGALS1P09382 135 aaKnown RBP0.44□□□□□ -2.34
VPS50-216ENST00000484954 OCMP0CE72 109 aaPredicted RBP0.44□□□□□ -2.34
VPS50-216ENST00000484954 C8orf88P0DMB2 117 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 DDTP30046 118 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 CA5AP35218 305 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 RPL30P62888 115 aaKnown RBP0.44□□□□□ -2.34
VPS50-216ENST00000484954 GNA12Q03113 381 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 MLLT11Q13015 90 aaPredicted RBP0.44□□□□□ -2.34
VPS50-216ENST00000484954 RASSF6Q6ZTQ3 369 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 DYNAPQ8N1N2 210 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 Q8N402 240 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 SLC7A6Q92536 515 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 C12orf43Q96C57 262 aaKnown RBP0.44□□□□□ -2.34
VPS50-216ENST00000484954 ANKRD36BP1Q96IX9 119 aa0.44□□□□□ -2.34
VPS50-216ENST00000484954 LLPHQ9BRT6 129 aaKnown RBP0.44□□□□□ -2.34
VPS50-216ENST00000484954 OR8D2Q9GZM6 311 aa0.44□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms