RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 ANKRD30BLA7E2S9 258 aa15.73■□□□□ 0.11
CCDC88B-207ENST00000479965 RAC2P15153 192 aa15.73■□□□□ 0.11
CCDC88B-207ENST00000479965 CTRLP40313 264 aa15.73■□□□□ 0.11
CCDC88B-207ENST00000479965 FOXG1P55316 489 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-207ENST00000479965 SRYQ05066 204 aa15.73■□□□□ 0.11
CCDC88B-207ENST00000479965 RRHO14718 337 aa15.73■□□□□ 0.11
CCDC88B-207ENST00000479965 FXYD3Q14802 87 aa15.73■□□□□ 0.11
CCDC88B-207ENST00000479965 YTHDF2Q9Y5A9 579 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-207ENST00000479965 CBY3A6NI87 242 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 C3orf79P0CE67 100 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 UBE2V1Q13404 147 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 FBXO46Q6PJ61 603 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 ZNF738Q8NE65 137 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 IFI44Q8TCB0 444 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 ORAOV1Q8WV07 137 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 MRPL33O75394 65 aaKnown RBP15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 OR2H2O95918 312 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 LGALS4P56470 323 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 Q0VG73 95 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 MRPL54Q6P161 138 aaKnown RBP15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 A0A1W2PS18 150 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 RFPL3SP0C7P2 107 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 SRIP30626 198 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 OTX2P32243 289 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 PCOLCEQ15113 449 aa15.72■□□□□ 0.11
CCDC88B-207ENST00000479965 TRBV6-6A0A0A6YYG2 114 aa15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 EPHA8P29322 1005 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 CEBPDP49716 269 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 ZNF83P51522 516 aa15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 COLCA1Q6ZS62 124 aa15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 OR52L2PQ8NGH6 319 aa15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 BORCS7Q96B45 105 aa15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 BET1LQ9NYM9 111 aa15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 CLDN14O95500 239 aa15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 EN2P19622 333 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 GFRA1P56159 465 aa15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 GNG3P63215 75 aa15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 COL6A3P12111 3177 aa15.71■□□□□ 0.11
CCDC88B-207ENST00000479965 VAMP3Q15836 100 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 GGNQ86UU5 652 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 VASH2Q86V25 355 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 DOLPP1Q86YN1 238 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 OR2M7Q8NG81 312 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 PLPPR2Q96GM1 343 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 ZNF503-AS2A6NEH8 195 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 RPS19BP1Q86WX3 136 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 KLHDC1Q8N7A1 406 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 TCTEX1D1Q8N7M0 179 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 KCNS1Q96KK3 526 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 RNASE7Q9H1E1 156 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 WDR83OSQ9Y284 106 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 COX11Q9Y6N1 276 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 TSPOP30536 169 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 Q8N7P7 452 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 PRDM6Q9NQX0 595 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 SERTAD4Q9NUC0 356 aa15.7■□□□□ 0.1
CCDC88B-207ENST00000479965 C15orf62A8K5M9 175 aa15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 M0QZ24 198 aa15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 CXorf1O96002 111 aa15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 CATR1Q13166 79 aa15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 FAM234AQ9H0X4 552 aa15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 ZNF324O75467 553 aaPredicted RBP15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 S100A7P31151 101 aa15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 RIPPLY2Q5TAB7 128 aa15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 SPATA31B1PQ5VZV4 182 aa15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 SYT13Q7L8C5 426 aa15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 ZNF645Q8N7E2 425 aa15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 VPS25Q9BRG1 176 aa15.69■□□□□ 0.1
CCDC88B-207ENST00000479965 IGHV3-43A0A0B4J1X8 118 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 DEFB108AA8MXU0 73 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 ITGB1BP1O14713 200 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 NEURL1O76050 574 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 IGHV3-43DP0DP04 118 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 LTC4SQ16873 150 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 GUSBP11Q6P575 273 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 LINC00596Q86U02 117 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 SLC35D1Q9NTN3 355 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 GTF3C1Q12789 2109 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 FBLN7Q53RD9 439 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 Q6P435 159 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 ZNF497Q6ZNH5 498 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 C5orf30Q96GV9 206 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 EAF1Q96JC9 268 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 HEYLQ9NQ87 328 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 KCNIP1Q9NZI2 227 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 MED12LQ86YW9 2145 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 LOC105371242A0A075B767 164 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 NPIPB11E5RHQ5 1161 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 FOXH1O75593 365 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 NXPH2O95156 264 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 Q56UQ5 140 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 ASPHD1Q5U4P2 390 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 NINJ1Q92982 152 aa15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 GMPPAQ96IJ6 420 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-207ENST00000479965 STAG3L2P0CL84 134 aa15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 STAG3L3P0CL85 134 aa15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 CDKN1BP46527 198 aa15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 B3GALT5-AS1P59052 145 aa15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 HOXA4Q00056 320 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 STUMQ69YW2 141 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms