RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 OR4A47Q6IF82 309 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 ZNF322Q6U7Q0 402 aaPredicted RBP3.31□□□□□ -1.88
USP4-209ENST00000475873 TRPT1Q86TN4 253 aaKnown RBP3.31□□□□□ -1.88
USP4-209ENST00000475873 SERPINA12Q8IW75 414 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 GAPTQ8N292 157 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 NECAP1Q8NC96 275 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 OR13C9Q8NGT0 318 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 OR4K15Q8NH41 348 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 PP6455Q8WZ26 134 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 TMEM190Q8WZ59 177 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 SPSB1Q96BD6 273 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 MRPS24Q96EL2 167 aaKnown RBP3.31□□□□□ -1.88
USP4-209ENST00000475873 SULT4A1Q9BR01 284 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 TMEM70Q9BUB7 260 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 TMEM109Q9BVC6 243 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 ALG8Q9BVK2 526 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 TPPP3Q9BW30 176 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 ROPN1BQ9BZX4 212 aaPredicted RBP3.31□□□□□ -1.88
USP4-209ENST00000475873 VCX2Q9H322 139 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 RHOFQ9HBH0 211 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 OR2S2Q9NQN1 319 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 DKK2Q9UBU2 259 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 WARS2Q9UGM6 360 aaKnown RBP3.31□□□□□ -1.88
USP4-209ENST00000475873 TBC1D24Q9ULP9 559 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 ING4Q9UNL4 249 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 BAIAP2Q9UQB8 552 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 TMED3Q9Y3Q3 217 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 TNFRSF18Q9Y5U5 241 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 V9GYQ6 96 aa3.31□□□□□ -1.88
USP4-209ENST00000475873 IGKV3-7A0A075B6H7 116 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 A0A1W2PPQ1 181 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 AIPO00170 330 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 MRASO14807 208 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 GEMIN2O14893 280 aaKnown RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 SPINT2O43291 252 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 DENRO43583 198 aaKnown RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 ZNF207O43670 478 aaKnown RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 NDUFS6O75380 124 aaKnown RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 SNAPINO95295 136 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 MBP02144 154 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 APOA1P02647 267 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 MT-ND2P03891 347 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 TMEM225BP0DP42 221 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 GCSHP23434 173 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 G0S2P27469 103 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 MAS1LP35410 378 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 SOX2P48431 317 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 CXCR4P61073 352 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 VAMP2P63027 116 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 FLOT2Q14254 428 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 GPR176Q14439 515 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 MICAQ29983 383 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 YIF1BQ5BJH7 314 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 SAMD4BQ5PRF9 694 aaKnown RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 ATAD3CQ5T2N8 411 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 FAM71F2Q6NXP2 309 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 C8orf82Q6P1X6 216 aaPredicted RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 ZNF529Q6P280 563 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 CCDC28AQ8IWP9 274 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 CENPSQ8N2Z9 138 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 OR51A4Q8NGJ6 313 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 SRSF12Q8WXF0 261 aaKnown RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 FAM162AQ96A26 154 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 FGGYQ96C11 551 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 RNF125Q96EQ8 232 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 ABHD14BQ96IU4 210 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 RNF2Q99496 336 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 NEU1Q99519 415 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 TSNAXQ99598 290 aaKnown RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 RNF5Q99942 180 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 KCTD14Q9BQ13 255 aaPredicted RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 ATG101Q9BSB4 218 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 AGMATQ9BSE5 352 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 ZNF436Q9C0F3 470 aaPredicted RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 Q9H8V8 135 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 TAF9BQ9HBM6 251 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 ZNF586Q9NXT0 402 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 DAPK2Q9UIK4 370 aa3.3□□□□□ -1.88
USP4-209ENST00000475873 EXOSC1Q9Y3B2 195 aaKnown RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 STRAPQ9Y3F4 350 aaKnown RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 SAMHD1Q9Y3Z3 626 aaKnown RBP3.3□□□□□ -1.88
USP4-209ENST00000475873 A0A087WTM6 91 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 A0A1W2PP11 408 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 HMX3A6NHT5 357 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 TEX22C9J3V5 150 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 E7EUB6 86 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 YPEL1O60688 119 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 KRT36O76013 467 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 OR7C1O76099 320 aaPredicted RBP3.29□□□□□ -1.88
USP4-209ENST00000475873 SCGB1D1O95968 90 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 DHFRP00374 187 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 SERPINA3P01011 423 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 IFNA5P01569 189 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 CLEC3BP05452 202 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 GNAO1P09471 354 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 ZNF735P0CB33 412 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 DBTP11182 482 aaKnown RBP3.29□□□□□ -1.88
USP4-209ENST00000475873 NPY1RP25929 384 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 EPHA2P29317 976 aa3.29□□□□□ -1.88
USP4-209ENST00000475873 MC5RP33032 325 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms