RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 GCM1Q9NP62 436 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 TANC2Q9HCD6 1990 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 SPTBN2O15020 2390 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 ROS1P08922 2347 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 PCNX1Q96RV3 2341 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 CXorf65A6NEN9 183 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 A8MXE2 369 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 B4DEV8 164 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 CYB5BO43169 146 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 IGHV1-46P01743 117 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 PNRC1Q12796 327 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-217ENST00000466159 CT45A1Q5HYN5 189 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 NCMAPQ5T1S8 102 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 Q8N7P7 452 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 CT45A3Q8NHU0 189 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 S1PR3Q99500 378 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 SSX3Q99909 188 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 SEBOXQ9HB31 216 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-217ENST00000466159 ADGRG4Q8IZF6 3080 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 DYSFO75923 2080 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 DCHS1Q96JQ0 3298 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 ACACAQ13085 2346 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 RRHO14718 337 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 IFNA10P01566 189 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 MBP02144 154 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 CRYABP02511 175 aaKnown RBP7.38□□□□□ -1.23
SYNE1-217ENST00000466159 CD1BP29016 333 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 CEACAM8P31997 349 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-217ENST00000466159 SPCS3P61009 180 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 TNFAIP6P98066 277 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-217ENST00000466159 PMS2P11Q13670 270 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 KIAA0141Q14154 515 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-217ENST00000466159 GCSAMLQ5JQS6 135 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 NANPQ8TBE9 248 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 SFXN3Q9BWM7 321 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 ACTR3CQ9C0K3 210 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-217ENST00000466159 DCAF16Q9NXF7 216 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 RNF7Q9UBF6 113 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 ANKRD11Q6UB99 2663 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-217ENST00000466159 CUL9Q8IWT3 2517 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 CD40P25942 277 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 GATA4P43694 442 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 PSMB3P49720 205 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 ERVK-16P61578 105 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 RELBQ01201 579 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 C3orf36Q3SXR2 165 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 AARDQ4LEZ3 155 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 TCF23Q7RTU1 214 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 ABHD12Q8N2K0 398 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 FAM57AQ8TBR7 257 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 FAM222BQ8WU58 562 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 DDB2Q92466 427 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 RPUSD4Q96CM3 377 aaKnown RBP7.38□□□□□ -1.23
SYNE1-217ENST00000466159 CCL13Q99616 98 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 SMIM7Q9BQ49 75 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 HEYLQ9NQ87 328 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-217ENST00000466159 TMEM140Q9NV12 185 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 GFOD1Q9NXC2 390 aa7.38□□□□□ -1.23
SYNE1-217ENST00000466159 SAA2-SAA4A0A096LPE2 208 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 KBTBD11-OT1A0A1B0GTJ5 212 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 SMCO3A2RU48 225 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 RBFOX2O43251 390 aaKnown RBP eCLIP7.37□□□□□ -1.23
SYNE1-217ENST00000466159 YIF1AO95070 293 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 GYPAP02724 150 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 S100A8P05109 93 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 FABP1P07148 127 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 SAA2P0DJI9 122 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-217ENST00000466159 CCKARP32238 428 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 VDAC2P45880 294 aaPredicted RBP7.37□□□□□ -1.23
SYNE1-217ENST00000466159 ZNF600Q6ZNG1 722 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 FAM216BQ8N7L0 139 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 PRSS33Q8NF86 280 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 TMEM170AQ8WVE7 144 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 SNRNP40Q96DI7 357 aaKnown RBP7.37□□□□□ -1.23
SYNE1-217ENST00000466159 IL19Q9UHD0 177 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 WDR83OSQ9Y284 106 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 PIEZO2Q9H5I5 2752 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 TRAV38-1A0A0B4J264 116 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 FAM90A9PA6NNJ1 464 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 C17orf112F2Z3M2 114 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 CLDN34H7C241 214 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 GFRA3O60609 400 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 PAGE4O60829 102 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 CLN5O75503 358 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 TRGC2P03986 189 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 SELENOVP59797 346 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 ADIRFQ15847 76 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 STUMQ69YW2 141 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 LYG1Q8N1E2 194 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 OR4F5Q8NH21 305 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 SDSLQ96GA7 329 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 GAFA1Q96PS6 74 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 OR4F4Q96R69 305 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 ZNF251Q9BRH9 671 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 GSN-AS1Q9NRJ2 163 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 TMEM242Q9NWH2 141 aa7.37□□□□□ -1.23
SYNE1-217ENST00000466159 TRGV10A0A0A0MS01 117 aa7.36□□□□□ -1.23
SYNE1-217ENST00000466159 DLL1O00548 723 aa7.36□□□□□ -1.23
SYNE1-217ENST00000466159 MMP23AO75900 390 aa7.36□□□□□ -1.23
SYNE1-217ENST00000466159 SMIM6P0DI80 62 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms