RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 C1QL2Q7Z5L3 287 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 TMEM56-RWDD3S4R434 201 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 IGKV3D-11A0A0A0MRZ8 115 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 PLAUP00749 431 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 KIR2DL2P43627 348 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 PIKFYVEQ9Y2I7 2098 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 PSME4Q14997 1843 aa16.23■□□□□ 0.19
CCDC88B-204ENST00000463837 C17orf51A8MQB3 221 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 ATOH7Q8N100 152 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 OR5R1Q8NH85 324 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 OR5P3Q8WZ94 311 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 SCN10AQ9Y5Y9 1956 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 HLA-DRB1P01911 266 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 CA7P43166 264 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 ZNF146Q15072 292 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 C1orf185Q5T7R7 199 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 TCF19Q9Y242 345 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 CABIN1Q9Y6J0 2220 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 PLXNA1Q9UIW2 1896 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 TMPRSS3P57727 454 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 C18orf12Q96KH6 178 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 SRXN1Q9BYN0 137 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 PPIAL4EA0A075B759 164 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 hCG_38984A0A1B0GV85 526 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 TMEM238LA0A1B0GVL6 79 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 A6NJY4 79 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 PPIAL4DF5H284 164 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 PPIAL4FP0DN26 164 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 NRN1LQ496H8 165 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 PPIAL4AQ9Y536 164 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 EGR1P18146 543 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 RPS20P60866 119 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 NPCDR1Q9BY65 106 aa16.22■□□□□ 0.19
CCDC88B-204ENST00000463837 MAS1LP35410 378 aa16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 SPRED2Q7Z698 418 aa16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 CALYQ9NYX4 217 aa16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 IL36BQ9NZH7 164 aa16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 PGPA6NDG6 321 aa16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 NUBP1P53384 320 aa16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 ZNF841Q6ZN19 808 aa16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 GLRX5Q86SX6 157 aa16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 BTF3P20290 206 aaKnown RBP16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 CRYBB3P26998 211 aa16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 WDR31Q8NA23 367 aa16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 ZDHHC8Q9ULC8 765 aa16.21■□□□□ 0.19
CCDC88B-204ENST00000463837 CEBPDP49716 269 aaPredicted RBP16.21■□□□□ 0.18
CCDC88B-204ENST00000463837 MGPP08493 103 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 PLP1P60201 277 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 CCDC144NLQ6NUI1 221 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 GATAD1Q8WUU5 269 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 IDI2-AS1Q9NZ38 188 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 ZNF826PQ6ZT77 177 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 ZCCHC14Q8WYQ9 949 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 GFI1Q99684 422 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 BRCA1P38398 1863 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 PCOLCEQ15113 449 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 SYNGR3O43761 229 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 ZIC3O60481 467 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 SLC25A53Q5H9E4 307 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 TEX29Q8N6K0 151 aa16.2■□□□□ 0.18
CCDC88B-204ENST00000463837 PDCD11Q14690 1871 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 AHRRA9YTQ3 701 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 COX6A1P12074 109 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 CTAG1AP78358 180 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 RAB37Q96AX2 223 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 HSPB7Q9UBY9 170 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 HS3ST3B1Q9Y662 390 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 CCL1P22362 96 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 STPG3Q8N7X2 389 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 SMIM12Q96EX1 92 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 SSTR5P35346 364 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 DLX1P56177 255 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 TWIST1Q15672 202 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 ERASQ7Z444 233 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 OR10AG1Q8NH19 301 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 NABP2Q9BQ15 211 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 DGAT2L7PQ6IED9 249 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 PGLYRP4Q96LB8 373 aa16.19■□□□□ 0.18
CCDC88B-204ENST00000463837 IGKV1D-43A0A0B4J1Z2 117 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 CBLN1P23435 193 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 REG4Q9BYZ8 158 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 TNFRSF19Q9NS68 423 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 UNC13CQ8NB66 2214 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 DPRXA6NFQ7 191 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 TMEM177Q53S58 311 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 SLC25A45Q8N413 288 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 FAM89BQ8N5H3 189 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 CD5P06127 495 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 GPR6P46095 362 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 SRSF3P84103 164 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 RALYQ9UKM9 306 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 CENPWQ5EE01 88 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 TMUB1Q9BVT8 246 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 TMEM74BQ9NUR3 256 aa16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 NYNRINQ9P2P1 1898 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-204ENST00000463837 IGKV3-7A0A075B6H7 116 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 H0YIZ8 118 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 ICAM4Q14773 271 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 OR51G1Q8NGK1 321 aa16.17■□□□□ 0.18
CCDC88B-204ENST00000463837 TMEM70Q9BUB7 260 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms