RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 LEMD1Q68G75 181 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 ZNF880Q6PDB4 577 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 TIMD4Q96H15 378 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 VPS25Q9BRG1 176 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 ZNF407Q9C0G0 2248 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 Q0VG73 95 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 C10orf113Q5VZT2 155 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 FAM231BA6NCW3 169 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 NDUFB4O95168 129 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 SAP25Q8TEE9 199 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 WNT2BQ93097 391 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 DOCK7Q96N67 2140 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 ZFP30Q9Y2G7 519 aa5.98□□□□□ -1.45
SYNE1-216ENST00000461872 NTF3P20783 257 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 PDLIM4P50479 330 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 PRRX1P54821 245 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 TLE1Q04724 770 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 CT83Q5H943 113 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 ACSM6Q6P461 480 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 SLC25A34Q6PIV7 304 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 Q6ZS52 159 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 SLC25A40Q8TBP6 338 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 VCX2Q9H322 139 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 ZNF430Q9H8G1 570 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-216ENST00000461872 CLEC1BQ9P126 229 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 ODAMA1E959 279 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 ZIC3O60481 467 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 RAMP1O60894 148 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 CEACAM3P40198 252 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 SNAI3Q3KNW1 292 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 DRAM1Q8N682 238 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 G3V3Y1 287 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 YPEL1O60688 119 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 OR10J4P0C629 311 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 SRSF3P84103 164 aaKnown RBP5.97□□□□□ -1.45
SYNE1-216ENST00000461872 SPNS3Q6ZMD2 512 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 C1QL2Q7Z5L3 287 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 LRRC29Q8WV35 223 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 YPEL2Q96QA6 119 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 RPP25Q9BUL9 199 aaKnown RBP5.97□□□□□ -1.45
SYNE1-216ENST00000461872 PPIHO43447 177 aaKnown RBP5.97□□□□□ -1.45
SYNE1-216ENST00000461872 ARL16Q0P5N6 197 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 GUSBP11Q6P575 273 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 TRAV39A0A0B4J263 110 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 PYY3Q5JQD4 70 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 DCAF10Q5QP82 559 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 PMS2CLQ68D20 193 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 FAM71F2Q6NXP2 309 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 RNF166Q96A37 237 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-216ENST00000461872 PRDM13Q9H4Q3 707 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 HS3ST3B1Q9Y662 390 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.97□□□□□ -1.45
SYNE1-216ENST00000461872 IQCF6A8MYZ5 107 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 HSPB9Q9BQS6 159 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 RAB1BQ9H0U4 201 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 AKAP6Q13023 2319 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 A8MWP6 167 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 PRKNO60260 465 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-216ENST00000461872 STAG3L3P0CL85 134 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 EDDM3AQ14507 147 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 TMEM144Q7Z5S9 345 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 TUSC5Q8IXB3 177 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 SCCPDHQ8NBX0 429 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 CHCHD1Q96BP2 118 aaKnown RBP5.97□□□□□ -1.45
SYNE1-216ENST00000461872 PRR13Q9NZ81 148 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 RNF115Q9Y4L5 304 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 IGHV3-15A0A0B4J1V0 119 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 ZNF716A6NP11 495 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 MPV17P39210 176 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 COL10A1Q03692 680 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 C5orf17Q8NAS9 161 aa5.97□□□□□ -1.45
SYNE1-216ENST00000461872 PEF1Q9UBV8 284 aaKnown RBP5.97□□□□□ -1.45
SYNE1-216ENST00000461872 AHRRA9YTQ3 701 aa5.96□□□□□ -1.45
SYNE1-216ENST00000461872 GCHFRP30047 84 aa5.96□□□□□ -1.45
SYNE1-216ENST00000461872 PSG5Q15238 335 aa5.96□□□□□ -1.45
SYNE1-216ENST00000461872 FAM214BQ7L5A3 538 aa5.96□□□□□ -1.45
SYNE1-216ENST00000461872 BPIFA4PQ86YQ2 179 aa5.96□□□□□ -1.45
SYNE1-216ENST00000461872 RNF7Q9UBF6 113 aa5.96□□□□□ -1.45
SYNE1-216ENST00000461872 TCF19Q9Y242 345 aa5.96□□□□□ -1.45
SYNE1-216ENST00000461872 BMI1P35226 326 aa5.96□□□□□ -1.45
SYNE1-216ENST00000461872 RPL31P62899 125 aaKnown RBP5.96□□□□□ -1.45
SYNE1-216ENST00000461872 Q6ZT83 130 aa5.96□□□□□ -1.45
SYNE1-216ENST00000461872 SLC25A45Q8N413 288 aa5.96□□□□□ -1.45
SYNE1-216ENST00000461872 MRPS16Q9Y3D3 137 aaKnown RBP5.96□□□□□ -1.45
SYNE1-216ENST00000461872 C19orf67A6NJJ6 358 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 H0Y8G0 127 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 J3QR06 171 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 ZG16O60844 167 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 AMBPP02760 352 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 TIMP3P35625 211 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 IER3P46695 156 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 FABP6P51161 128 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 HBBP68871 147 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 OR1L1Q8NH94 360 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 PRR33A8MZF0 331 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 MNX1P50219 401 aaPredicted RBP5.96□□□□□ -1.46
SYNE1-216ENST00000461872 MEOX1P50221 254 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 OR4A47Q6IF82 309 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 ZNF775Q96BV0 537 aaPredicted RBP5.96□□□□□ -1.46
SYNE1-216ENST00000461872 DYNLRB1Q9NP97 96 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms