RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 MFAP2P55001 183 aa12.53□□□□□ -0.4
PTPRU-205ENST00000460170 LINC00518Q8N0U6 118 aa12.53□□□□□ -0.4
PTPRU-205ENST00000460170 TMEM56-RWDD3S4R434 201 aa12.53□□□□□ -0.4
PTPRU-205ENST00000460170 SNRPCP09234 159 aaKnown RBP12.52□□□□□ -0.4
PTPRU-205ENST00000460170 GLRXP35754 106 aa12.52□□□□□ -0.4
PTPRU-205ENST00000460170 WDR25Q64LD2 544 aaPredicted RBP12.52□□□□□ -0.4
PTPRU-205ENST00000460170 PARLQ9H300 379 aa12.52□□□□□ -0.4
PTPRU-205ENST00000460170 LDLRAD4O15165 306 aa12.52□□□□□ -0.4
PTPRU-205ENST00000460170 NDUFA2O43678 99 aa12.52□□□□□ -0.4
PTPRU-205ENST00000460170 KBTBD11O94819 623 aa12.52□□□□□ -0.4
PTPRU-205ENST00000460170 TNFSF10P50591 281 aa12.52□□□□□ -0.4
PTPRU-205ENST00000460170 TMEM30BQ3MIR4 351 aa12.52□□□□□ -0.4
PTPRU-205ENST00000460170 ZIC4Q8N9L1 334 aa12.52□□□□□ -0.4
PTPRU-205ENST00000460170 TMEM250H0YL14 139 aa12.52□□□□□ -0.41
PTPRU-205ENST00000460170 GOSR1O95249 250 aa12.52□□□□□ -0.41
PTPRU-205ENST00000460170 FAM166AQ6J272 317 aa12.52□□□□□ -0.41
PTPRU-205ENST00000460170 TMEM191AQ9H0A3 160 aa12.52□□□□□ -0.41
PTPRU-205ENST00000460170 ARL14EPLP0DKL9 152 aa12.52□□□□□ -0.41
PTPRU-205ENST00000460170 HCP5Q6MZN7 132 aa12.52□□□□□ -0.41
PTPRU-205ENST00000460170 CORTO00230 105 aa12.52□□□□□ -0.41
PTPRU-205ENST00000460170 MT-ND6P03923 174 aa12.52□□□□□ -0.41
PTPRU-205ENST00000460170 TIMM23BQ5SRD1 257 aa12.52□□□□□ -0.41
PTPRU-205ENST00000460170 Q6ZN92 141 aa12.52□□□□□ -0.41
PTPRU-205ENST00000460170 QTRT1Q9BXR0 403 aaKnown RBP12.52□□□□□ -0.41
PTPRU-205ENST00000460170 F8VVB4 439 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 F8VWA3 439 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 C1orf162Q8NEQ5 155 aaPredicted RBP12.51□□□□□ -0.41
PTPRU-205ENST00000460170 ZNF430Q9H8G1 570 aaPredicted RBP12.51□□□□□ -0.41
PTPRU-205ENST00000460170 FOXD3Q9UJU5 478 aaPredicted RBP12.51□□□□□ -0.41
PTPRU-205ENST00000460170 NTN3O00634 580 aaPredicted RBP12.51□□□□□ -0.41
PTPRU-205ENST00000460170 FAM87AP0C7U9 286 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 CRYGSP22914 178 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 UCNP55089 124 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 PRR7Q8TB68 274 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 RIF1Q5UIP0 2472 aaKnown RBP12.51□□□□□ -0.41
PTPRU-205ENST00000460170 MDC1Q14676 2089 aaKnown RBP12.51□□□□□ -0.41
PTPRU-205ENST00000460170 IGKV1D-8A0A087WSZ0 117 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 C9orf172C9J069 976 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 SLC25A17O43808 307 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 SLC35B1P78383 322 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 STARD4Q96DR4 205 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 TRBV6-7A0A0A0MS04 114 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 AGAP20933 346 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 RND2P52198 227 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 LRRC75BQ2VPJ9 315 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 IBA57Q5T440 356 aaKnown RBP12.51□□□□□ -0.41
PTPRU-205ENST00000460170 WDYHV1Q96HA8 205 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 MEGF10Q96KG7 1140 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 GOLT1BQ9Y3E0 138 aa12.51□□□□□ -0.41
PTPRU-205ENST00000460170 J3QR89 54 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 ZNF343Q6P1L6 599 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 C18orf12Q96KH6 178 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 UBTD1Q9HAC8 227 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 ZNF318Q5VUA4 2279 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 IGHV1-2P23083 117 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 IGKV1D-13A0A0B4J2D9 117 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 E9PQ18 207 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 C8orf88P0DMB2 117 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 IGKV1-13P0DP09 117 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 GPR6P46095 362 aaPredicted RBP12.5□□□□□ -0.41
PTPRU-205ENST00000460170 PAFAH1B2P68402 229 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 OR1P1Q8NH06 330 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 RSPO3Q9BXY4 272 aaPredicted RBP12.5□□□□□ -0.41
PTPRU-205ENST00000460170 GPR61Q9BZJ8 451 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 GSX1Q9H4S2 264 aaPredicted RBP12.5□□□□□ -0.41
PTPRU-205ENST00000460170 DNAJC4Q9NNZ3 241 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 PLAUP00749 431 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 FHL1Q13642 323 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 RPL39P5Q59GN2 51 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 VN1R17PQ8TDU5 208 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 TNFRSF19Q9NS68 423 aa12.5□□□□□ -0.41
PTPRU-205ENST00000460170 METTL1Q9UBP6 276 aaKnown RBP12.5□□□□□ -0.41
PTPRU-205ENST00000460170 C17orf98A8MV24 154 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 A8MWL6 223 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 CDX1P47902 265 aaPredicted RBP12.49□□□□□ -0.41
PTPRU-205ENST00000460170 ZNF146Q15072 292 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 OR4C5Q8NGB2 326 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 OR4C13Q8NGP0 309 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 SPSB4Q96A44 273 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 NABP1Q96AH0 204 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 SCNM1Q9BWG6 230 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 BET1LQ9NYM9 111 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 DNASE2O00115 360 aaPredicted RBP12.49□□□□□ -0.41
PTPRU-205ENST00000460170 ORM1P02763 201 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 OR13A1Q8NGR1 328 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 GTF3AQ92664 365 aaKnown RBP12.49□□□□□ -0.41
PTPRU-205ENST00000460170 NAGKQ9UJ70 344 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 GPR179Q6PRD1 2367 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 CELA3BP08861 270 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 SRP19P09132 144 aaKnown RBP12.49□□□□□ -0.41
PTPRU-205ENST00000460170 PAM16Q9Y3D7 125 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 ESPL1Q14674 2120 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 IQCF6A8MYZ5 107 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 LHFPL1Q86WI0 220 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 OR9G1Q8NH87 305 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 FGFBP3Q8TAT2 258 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 TBX15Q96SF7 602 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 SEMA5BQ9P283 1151 aa12.49□□□□□ -0.41
PTPRU-205ENST00000460170 FGF16O43320 207 aa12.48□□□□□ -0.41
PTPRU-205ENST00000460170 ACAA1P09110 424 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms