RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 METTL27Q8N6F8 245 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM229BQ8NBD8 167 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 OR52R1Q8NGF1 315 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 OR4B1Q8NGF8 309 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 OR5AK2Q8NH90 309 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 JOSD2Q8TAC2 188 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 RDH5Q92781 318 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 SLC25A46Q96AG3 418 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ACY3Q96HD9 319 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 SDF2Q99470 211 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 SPIN2AQ99865 258 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 SPIN2BQ9BPZ2 258 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 SOSTQ9BQB4 213 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM222Q9H0R3 208 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 KCNIP1Q9NZI2 227 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 SHPKQ9UHJ6 478 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 SOX21Q9Y651 276 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 CEP192Q8TEP8 1941 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 CEP295Q9C0D2 2601 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 IGHV2-26A0A0B4J1V2 119 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 KRTAP23-1A1A580 65 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 OR2M5A3KFT3 312 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 RHODO00212 210 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 HYPMO75409 117 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 IGLV3-25P01717 112 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 IGLV3-27P01718 113 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 HLA-DQB2P05538 268 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 GP9P14770 177 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 GPD1P21695 349 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 CTRLP40313 264 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 NUDT2P50583 147 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 HILS1P60008 231 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 UBE2NP61088 152 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ISL1P61371 349 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ZNF92Q03936 586 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ELOBQ15370 118 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 TMEM52BQ4KMG9 183 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 MFSD12Q6NUT3 480 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 FBXL22Q6P050 247 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 C16orf82Q7Z2V1 217 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 RXFP2Q8WXD0 754 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 DDB2Q92466 427 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 SH3BGRL3Q9H299 93 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 FBXL15Q9H469 300 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ACER3Q9NUN7 267 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 FUT9Q9Y231 359 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 NTNG1Q9Y2I2 539 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 PAM16Q9Y3D7 125 aa3.97□□□□□ -1.77
CCDC88A-209ENST00000456975 ASH1LQ9NR48 2969 aaKnown RBP3.96□□□□□ -1.77
CCDC88A-209ENST00000456975 TNRC6BQ9UPQ9 1833 aaKnown RBP3.96□□□□□ -1.77
CCDC88A-209ENST00000456975 CHD3Q12873 2000 aaKnown RBP3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 TRAV8-6A0A0B4J262 113 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 FNDC10F2Z333 226 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 NPFFO15130 113 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 OR2H2O95918 312 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 PLAUP00749 431 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 IGLC6P0CF74 106 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 TSPOP30536 169 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 INPP1P49441 399 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 PRR30Q53SZ7 412 aaPredicted RBP3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF571Q7Z3V5 609 aaPredicted RBP3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 HOGA1Q86XE5 327 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 LINC01561Q8N1V8 128 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 EXOC3-AS1Q8N2X6 119 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 TEX29Q8N6K0 151 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 SUMF2Q8NBJ7 301 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF740Q8NDX6 193 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 OR51T1Q8NGJ9 327 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 OR51G1Q8NGK1 321 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 BBC3Q96PG8 261 aaPredicted RBP3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 LINC00597Q9H2U6 94 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 C1RLQ9NZP8 487 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 CCDC167Q9P0B6 97 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 NEUROG3Q9Y4Z2 214 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 HS3ST3B1Q9Y662 390 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 ZZEF1O43149 2961 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 PTPRBP23467 1997 aa3.96□□□□□ -1.78
CCDC88A-209ENST00000456975 HELZP42694 1942 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 A0A087WWC5 75 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 PATE3B3GLJ2 98 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 CD5LO43866 347 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 UBL3O95164 117 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 HRASP01112 189 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 KRASP01116 189 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 CGAP01215 116 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 CD8AP01732 235 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 TTRP02766 147 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 CXCL1P09341 107 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 SCTP09683 121 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 PGA4P0DJD7 388 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 PGA5P0DJD9 388 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 CNTFRP26992 372 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 NDUFV3P56181 108 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 RBM11P57052 281 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 OR1D5P58170 312 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 YPEL3P61236 119 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 GGTLC2Q14390 218 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 ALG10Q5BKT4 473 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 ARTNQ5T4W7 220 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms