RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 PRR25Q96S07 402 aa13.78□□□□□ -0.2
MSH6-207ENST00000456246 SPIN2AQ99865 258 aa13.78□□□□□ -0.2
MSH6-207ENST00000456246 SPIN2BQ9BPZ2 258 aa13.78□□□□□ -0.2
MSH6-207ENST00000456246 TINAGL1Q9GZM7 467 aaPredicted RBP13.78□□□□□ -0.2
MSH6-207ENST00000456246 LSM4Q9Y4Z0 139 aaKnown RBP13.78□□□□□ -0.2
MSH6-207ENST00000456246 IGKV1D-13A0A0B4J2D9 117 aa13.77□□□□□ -0.21
MSH6-207ENST00000456246 IGLV2-14P01704 120 aa13.77□□□□□ -0.21
MSH6-207ENST00000456246 NHLRC4P0CG21 123 aaPredicted RBP13.77□□□□□ -0.21
MSH6-207ENST00000456246 IGKV1-13P0DP09 117 aa13.77□□□□□ -0.21
MSH6-207ENST00000456246 KIR2DS2P43631 304 aa13.77□□□□□ -0.21
MSH6-207ENST00000456246 MRGPRG-AS1Q2M3A8 158 aa13.77□□□□□ -0.21
MSH6-207ENST00000456246 ZBTB34Q8NCN2 500 aa13.77□□□□□ -0.21
MSH6-207ENST00000456246 SRSF12Q8WXF0 261 aaKnown RBP13.77□□□□□ -0.21
MSH6-207ENST00000456246 ACOT12Q8WYK0 555 aa13.77□□□□□ -0.21
MSH6-207ENST00000456246 YIPF6Q96EC8 236 aa13.77□□□□□ -0.21
MSH6-207ENST00000456246 S100A16Q96FQ6 103 aaKnown RBP13.77□□□□□ -0.21
MSH6-207ENST00000456246 COA4Q9NYJ1 87 aa13.77□□□□□ -0.21
MSH6-207ENST00000456246 MSGN1A6NI15 193 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 MPPED1O15442 326 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 XRCC3O43542 346 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 LY86O95711 162 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 OR9G9P0C7N8 305 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 UBE2NLQ5JXB2 153 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 IDO2Q6ZQW0 420 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 OR13F1Q8NGS4 319 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 TCTEX1D2Q8WW35 142 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 KCTD12Q96CX2 325 aaKnown RBP13.76□□□□□ -0.21
MSH6-207ENST00000456246 OR4C12Q96R67 309 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 AIFM2Q9BRQ8 373 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 ELOVL1Q9BW60 279 aa13.76□□□□□ -0.21
MSH6-207ENST00000456246 ZNF430Q9H8G1 570 aaPredicted RBP13.76□□□□□ -0.21
MSH6-207ENST00000456246 PPYP01298 95 aa13.75□□□□□ -0.21
MSH6-207ENST00000456246 FCGR2CP31995 323 aa13.75□□□□□ -0.21
MSH6-207ENST00000456246 RPL30P62888 115 aaKnown RBP13.75□□□□□ -0.21
MSH6-207ENST00000456246 EIF4EBP1Q13541 118 aaPredicted RBP13.75□□□□□ -0.21
MSH6-207ENST00000456246 SLC25A42Q86VD7 318 aa13.75□□□□□ -0.21
MSH6-207ENST00000456246 MFSD4AQ8N468 514 aa13.75□□□□□ -0.21
MSH6-207ENST00000456246 GVQW1Q8N7I0 195 aa13.75□□□□□ -0.21
MSH6-207ENST00000456246 ADAD2Q8NCV1 583 aaKnown RBP13.75□□□□□ -0.21
MSH6-207ENST00000456246 OR5AP2Q8NGF4 316 aa13.75□□□□□ -0.21
MSH6-207ENST00000456246 BORCS5Q969J3 196 aa13.75□□□□□ -0.21
MSH6-207ENST00000456246 TAS2R8Q9NYW2 309 aa13.75□□□□□ -0.21
MSH6-207ENST00000456246 OR2A4O95047 310 aa13.74□□□□□ -0.21
MSH6-207ENST00000456246 HRASP01112 189 aa13.74□□□□□ -0.21
MSH6-207ENST00000456246 MAS1LP35410 378 aa13.74□□□□□ -0.21
MSH6-207ENST00000456246 RPS19P39019 145 aaKnown RBP13.74□□□□□ -0.21
MSH6-207ENST00000456246 CATR1Q13166 79 aa13.74□□□□□ -0.21
MSH6-207ENST00000456246 OR2B11Q5JQS5 317 aa13.74□□□□□ -0.21
MSH6-207ENST00000456246 FAM209BQ5JX69 171 aa13.74□□□□□ -0.21
MSH6-207ENST00000456246 ZNF343Q6P1L6 599 aa13.74□□□□□ -0.21
MSH6-207ENST00000456246 OR2A7Q96R45 310 aa13.74□□□□□ -0.21
MSH6-207ENST00000456246 IFT46Q9NQC8 304 aa13.74□□□□□ -0.21
MSH6-207ENST00000456246 COL7A1Q02388 2944 aa13.74□□□□□ -0.21
MSH6-207ENST00000456246 FAM223BA6NKX1 122 aa13.73□□□□□ -0.21
MSH6-207ENST00000456246 TRIM64CA6NLI5 447 aa13.73□□□□□ -0.21
MSH6-207ENST00000456246 RBFOX2O43251 390 aaKnown RBP eCLIP13.73□□□□□ -0.211e-6■□□□□ 8.9
MSH6-207ENST00000456246 KBTBD11O94819 623 aa13.73□□□□□ -0.21
MSH6-207ENST00000456246 TMEM69Q5SWH9 247 aa13.73□□□□□ -0.21
MSH6-207ENST00000456246 FAM223AQ8IWN6 122 aa13.73□□□□□ -0.21
MSH6-207ENST00000456246 SAMD12Q8N8I0 201 aa13.73□□□□□ -0.21
MSH6-207ENST00000456246 TMEM167AQ8TBQ9 72 aa13.73□□□□□ -0.21
MSH6-207ENST00000456246 SECTM1Q8WVN6 248 aa13.73□□□□□ -0.21
MSH6-207ENST00000456246 GIMAP1Q8WWP7 306 aa13.73□□□□□ -0.21
MSH6-207ENST00000456246 SNAPC3Q92966 411 aa13.73□□□□□ -0.21
MSH6-207ENST00000456246 PEF1Q9UBV8 284 aaKnown RBP13.73□□□□□ -0.21
MSH6-207ENST00000456246 SMAD5-AS1Q9Y6J3 95 aa13.73□□□□□ -0.21
MSH6-207ENST00000456246 DYRK1AQ13627 763 aa13.72□□□□□ -0.21
MSH6-207ENST00000456246 TATDN3Q17R31 274 aa13.72□□□□□ -0.21
MSH6-207ENST00000456246 C11orf87Q6NUJ2 197 aa13.72□□□□□ -0.21
MSH6-207ENST00000456246 PUSL1Q8N0Z8 303 aaKnown RBP13.72□□□□□ -0.21
MSH6-207ENST00000456246 TTC9CQ8N5M4 171 aa13.72□□□□□ -0.21
MSH6-207ENST00000456246 SLC25A46Q96AG3 418 aa13.72□□□□□ -0.21
MSH6-207ENST00000456246 SLC5A7Q9GZV3 580 aa13.72□□□□□ -0.21
MSH6-207ENST00000456246 CCL28Q9NRJ3 127 aa13.72□□□□□ -0.21
MSH6-207ENST00000456246 ANKRD34BA5PLL1 514 aa13.71□□□□□ -0.21
MSH6-207ENST00000456246 APELAP0DMC3 54 aa13.71□□□□□ -0.21
MSH6-207ENST00000456246 TGFBR1P36897 503 aa13.71□□□□□ -0.21
MSH6-207ENST00000456246 TAS2R46P59540 309 aa13.71□□□□□ -0.21
MSH6-207ENST00000456246 TAS2R20P59543 309 aa13.71□□□□□ -0.21
MSH6-207ENST00000456246 HERV-K104P61576 105 aa13.71□□□□□ -0.21
MSH6-207ENST00000456246 LSM3P62310 102 aaKnown RBP13.71□□□□□ -0.21
MSH6-207ENST00000456246 KLF5Q13887 457 aaPredicted RBP13.71□□□□□ -0.21
MSH6-207ENST00000456246 OR4A5Q8NH83 315 aa13.71□□□□□ -0.21
MSH6-207ENST00000456246 CD300LFQ8TDQ1 290 aa13.71□□□□□ -0.21
MSH6-207ENST00000456246 CMTM3Q96MX0 182 aa13.71□□□□□ -0.21
MSH6-207ENST00000456246 ANAPC10Q9UM13 185 aa13.71□□□□□ -0.21
MSH6-207ENST00000456246 ZNF257Q9Y2Q1 563 aa13.71□□□□□ -0.21
MSH6-207ENST00000456246 TRBV9A0A0B4J1U6 114 aa13.7□□□□□ -0.22
MSH6-207ENST00000456246 GP9P14770 177 aa13.7□□□□□ -0.22
MSH6-207ENST00000456246 SPNP16150 400 aa13.7□□□□□ -0.22
MSH6-207ENST00000456246 RPL27AP46776 148 aaKnown RBP13.7□□□□□ -0.22
MSH6-207ENST00000456246 RHOGP84095 191 aa13.7□□□□□ -0.22
MSH6-207ENST00000456246 ANKRD13BQ86YJ7 626 aa13.7□□□□□ -0.22
MSH6-207ENST00000456246 VKORC1L1Q8N0U8 176 aa13.7□□□□□ -0.22
MSH6-207ENST00000456246 SPAG16Q8N0X2 631 aa13.7□□□□□ -0.22
MSH6-207ENST00000456246 NECAP1Q8NC96 275 aa13.7□□□□□ -0.22
MSH6-207ENST00000456246 OR9G4Q8NGQ1 327 aa13.7□□□□□ -0.22
MSH6-207ENST00000456246 BET1LQ9NYM9 111 aa13.7□□□□□ -0.22
MSH6-207ENST00000456246 EHFQ9NZC4 300 aa13.7□□□□□ -0.22
MSH6-207ENST00000456246 DPPA5A6NC42 116 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms