RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 C11orf87Q6NUJ2 197 aa9.26□□□□□ -0.93
USP40-210ENST00000454354 IDO2Q6ZQW0 420 aa9.26□□□□□ -0.93
USP40-210ENST00000454354 GVQW1Q8N7I0 195 aa9.26□□□□□ -0.93
USP40-210ENST00000454354 OR4S2Q8NH73 311 aa9.26□□□□□ -0.93
USP40-210ENST00000454354 SRSF12Q8WXF0 261 aaKnown RBP9.26□□□□□ -0.93
USP40-210ENST00000454354 ZNF430Q9H8G1 570 aaPredicted RBP9.26□□□□□ -0.93
USP40-210ENST00000454354 RANGRFQ9HD47 186 aaPredicted RBP9.26□□□□□ -0.93
USP40-210ENST00000454354 VCX3AQ9NNX9 186 aa9.26□□□□□ -0.93
USP40-210ENST00000454354 ZNF355PQ9NSJ1 428 aa9.26□□□□□ -0.93
USP40-210ENST00000454354 MRPS7Q9Y2R9 242 aaKnown RBP9.26□□□□□ -0.93
USP40-210ENST00000454354 DNAH7Q8WXX0 4024 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 KMT2CQ8NEZ4 4911 aaKnown RBP9.25□□□□□ -0.93
USP40-210ENST00000454354 XRCC3O43542 346 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 ZP3P21754 424 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 RPS19P39019 145 aaKnown RBP9.25□□□□□ -0.93
USP40-210ENST00000454354 CBX5P45973 191 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 BRWD1-AS2P59051 145 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 TNXAQ16473 311 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 UBE2NLQ5JXB2 153 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 ZNF66Q6ZN08 573 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 MMD2Q8IY49 270 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 PUSL1Q8N0Z8 303 aaKnown RBP9.25□□□□□ -0.93
USP40-210ENST00000454354 ADAD2Q8NCV1 583 aaKnown RBP9.25□□□□□ -0.93
USP40-210ENST00000454354 SNAPC3Q92966 411 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 USMG5Q96IX5 58 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 PHB2Q99623 299 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 ANAPC10Q9UM13 185 aa9.25□□□□□ -0.93
USP40-210ENST00000454354 MSGN1A6NI15 193 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 KBTBD11O94819 623 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 PPYP01298 95 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 OR9G9P0C7N8 305 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 NHLRC4P0CG21 123 aaPredicted RBP9.24□□□□□ -0.93
USP40-210ENST00000454354 PTHLHP12272 177 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 FCGR2CP31995 323 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 KIR2DS2P43631 304 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 DYRK1AQ13627 763 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 OR2B11Q5JQS5 317 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 ZNF343Q6P1L6 599 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 MFSD4AQ8N468 514 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 OR5AP2Q8NGF4 316 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 OR6Q1Q8NGQ2 317 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 OR13F1Q8NGS4 319 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 VSTM2AQ8TAG5 236 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 TCTEX1D2Q8WW35 142 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 ACOT12Q8WYK0 555 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 SPIN2AQ99865 258 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 SPIN2BQ9BPZ2 258 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 COA4Q9NYJ1 87 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 HUWE1Q7Z6Z7 4374 aaKnown RBP9.24□□□□□ -0.93
USP40-210ENST00000454354 NBEAL2Q6ZNJ1 2754 aa9.24□□□□□ -0.93
USP40-210ENST00000454354 TRBV9A0A0B4J1U6 114 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 RBFOX2O43251 390 aaKnown RBP eCLIP9.23□□□□□ -0.93
USP40-210ENST00000454354 RBMXL2O75526 392 aaKnown RBP9.23□□□□□ -0.93
USP40-210ENST00000454354 ACTL6BO94805 426 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 OR2A4O95047 310 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 APELAP0DMC3 54 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 MAS1LP35410 378 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 DEFA5Q01523 94 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 KLF5Q13887 457 aaPredicted RBP9.23□□□□□ -0.93
USP40-210ENST00000454354 TTC9CQ8N5M4 171 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 ZBTB34Q8NCN2 500 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 TMEM167AQ8TBQ9 72 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 SECTM1Q8WVN6 248 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 GIMAP1Q8WWP7 306 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 SLC25A46Q96AG3 418 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 KCTD12Q96CX2 325 aaKnown RBP9.23□□□□□ -0.93
USP40-210ENST00000454354 S100A16Q96FQ6 103 aaKnown RBP9.23□□□□□ -0.93
USP40-210ENST00000454354 OR2A7Q96R45 310 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 DCUN1D5Q9BTE7 237 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 ELOVL1Q9BW60 279 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 CCL28Q9NRJ3 127 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 TAS2R8Q9NYW2 309 aa9.23□□□□□ -0.93
USP40-210ENST00000454354 ANKRD34BA5PLL1 514 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 FAM223BA6NKX1 122 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 TEX22C9J3V5 150 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 LY86O95711 162 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 HRASP01112 189 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 IGLV1-51P01701 117 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 SPNP16150 400 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 TAS2R20P59543 309 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 LSM3P62310 102 aaKnown RBP9.22□□□□□ -0.93
USP40-210ENST00000454354 ZNF45Q02386 682 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 TMEM69Q5SWH9 247 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 C10orf55Q5SWW7 151 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 FAM223AQ8IWN6 122 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 VKORC1L1Q8N0U8 176 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 SAMD12Q8N8I0 201 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 OR4C12Q96R67 309 aa9.22□□□□□ -0.93
USP40-210ENST00000454354 PEF1Q9UBV8 284 aaKnown RBP9.22□□□□□ -0.93
USP40-210ENST00000454354 MEIS3P1A6NDR6 274 aa9.21□□□□□ -0.94
USP40-210ENST00000454354 NPIPB5A8MRT5 1133 aa9.21□□□□□ -0.94
USP40-210ENST00000454354 MPPED1O15442 326 aa9.21□□□□□ -0.94
USP40-210ENST00000454354 TNFSF12O43508 249 aa9.21□□□□□ -0.94
USP40-210ENST00000454354 TRBV12-3P01733 135 aa9.21□□□□□ -0.94
USP40-210ENST00000454354 ZNF735P0CB33 412 aa9.21□□□□□ -0.94
USP40-210ENST00000454354 GP9P14770 177 aa9.21□□□□□ -0.94
USP40-210ENST00000454354 NAT1P18440 290 aa9.21□□□□□ -0.94
USP40-210ENST00000454354 RHOGP84095 191 aa9.21□□□□□ -0.94
USP40-210ENST00000454354 CATR1Q13166 79 aa9.21□□□□□ -0.94
USP40-210ENST00000454354 KLK9Q2XQG4 91 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms