RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 VHLLQ6RSH7 139 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 C1orf87Q8N0U7 546 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 VKORC1L1Q8N0U8 176 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 OR52E5Q8NH55 327 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 DDB2Q92466 427 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 FAM234AQ9H0X4 552 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 C17orf112F2Z3M2 114 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 LY86O95711 162 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 SELLP14151 372 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 CD1BP29016 333 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 GATA4P43694 442 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 VDAC2P45880 294 aaPredicted RBP13.23□□□□□ -0.29
SHQ1-202ENST00000444040 CDX1P47902 265 aaPredicted RBP13.23□□□□□ -0.29
SHQ1-202ENST00000444040 RELBQ01201 579 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 NCOR1P1Q9H4R4 102 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 MANBALQ9NQG1 85 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 TRBV24-1A0A075B6N3 115 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 NDUFA6P56556 154 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 B2MP61769 119 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 TMEM241Q24JQ0 296 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 C1orf185Q5T7R7 199 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 FAM222BQ8WU58 562 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 NIT2Q9NQR4 276 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 GAB2Q9UQC2 676 aa13.23□□□□□ -0.29
SHQ1-202ENST00000444040 TRAV3A0A0B4J244 114 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 ITGB1BP1O14713 200 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 OPN1MWP04001 364 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 OPN1MW2P0DN77 364 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 OPN1MW3P0DN78 364 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 TIMP3P35625 211 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 OR4A16Q8NH70 328 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 PARLQ9H300 379 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 PRSS46E5RG02 174 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 C22orf34Q6ZV56 151 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 ABHD5Q8WTS1 349 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 RPUSD4Q96CM3 377 aaKnown RBP13.22□□□□□ -0.29
SHQ1-202ENST00000444040 S1PR3Q99500 378 aa13.22□□□□□ -0.29
SHQ1-202ENST00000444040 SEC14L6B5MCN3 397 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 PHOX2AO14813 284 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 RPL23P62829 140 aaKnown RBP13.21□□□□□ -0.29
SHQ1-202ENST00000444040 ADIRFQ15847 76 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 ACOT6Q3I5F7 207 aaPredicted RBP13.21□□□□□ -0.29
SHQ1-202ENST00000444040 SPNS3Q6ZMD2 512 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 RRHO14718 337 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 GFRA3O60609 400 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 CDC34P49427 236 aaPredicted RBP13.21□□□□□ -0.29
SHQ1-202ENST00000444040 CT45A1Q5HYN5 189 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 OR4F5Q8NH21 305 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 CT45A3Q8NHU0 189 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 TMEM170AQ8WVE7 144 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 LEAP2Q969E1 77 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 OR4F4Q96R69 305 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 TMEM140Q9NV12 185 aa13.21□□□□□ -0.29
SHQ1-202ENST00000444040 K7EM74 188 aa13.21□□□□□ -0.3
SHQ1-202ENST00000444040 PAGE4O60829 102 aa13.21□□□□□ -0.3
SHQ1-202ENST00000444040 IFNA10P01566 189 aa13.21□□□□□ -0.3
SHQ1-202ENST00000444040 GCSAMLQ5JQS6 135 aa13.21□□□□□ -0.3
SHQ1-202ENST00000444040 DUX4L9Q6RFH8 374 aaPredicted RBP13.21□□□□□ -0.3
SHQ1-202ENST00000444040 SDSLQ96GA7 329 aa13.21□□□□□ -0.3
SHQ1-202ENST00000444040 GCM1Q9NP62 436 aa13.21□□□□□ -0.3
SHQ1-202ENST00000444040 GSN-AS1Q9NRJ2 163 aa13.21□□□□□ -0.3
SHQ1-202ENST00000444040 GFOD1Q9NXC2 390 aa13.21□□□□□ -0.3
SHQ1-202ENST00000444040 DMXL1Q9Y485 3027 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 SVILO95425 2214 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 KIR2DS2P43631 304 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 RAB7AP51149 207 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 TMPRSS3P57727 454 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 ERVK-16P61578 105 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 RPP30P78346 268 aaKnown RBP13.2□□□□□ -0.3
SHQ1-202ENST00000444040 BSXQ3C1V8 233 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 TREML4Q6UXN2 200 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 RBMXL3Q8N7X1 1067 aaKnown RBP13.2□□□□□ -0.3
SHQ1-202ENST00000444040 FRZBQ92765 325 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 NBEAQ8NFP9 2946 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 CADP27708 2225 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 KBTBD11-OT1A0A1B0GTJ5 212 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 PFN1P07737 140 aaKnown RBP13.2□□□□□ -0.3
SHQ1-202ENST00000444040 CEACAM8P31997 349 aaPredicted RBP13.2□□□□□ -0.3
SHQ1-202ENST00000444040 TMEM249Q2WGJ8 235 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 C16orf82Q7Z2V1 217 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 RAB1CQ92928 201 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 GGACTQ9BVM4 153 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 SFXN3Q9BWM7 321 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 HEYLQ9NQ87 328 aaPredicted RBP13.2□□□□□ -0.3
SHQ1-202ENST00000444040 RNF7Q9UBF6 113 aa13.2□□□□□ -0.3
SHQ1-202ENST00000444040 TGOLN2O43493 480 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 TRGC1P0CF51 173 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 FAM27E3Q08E93 113 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 RTP5Q14D33 572 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 STUMQ69YW2 141 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 TCF23Q7RTU1 214 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 SAA2-SAA4A0A096LPE2 208 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 MPDU1O75352 247 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 IGHV1-46P01743 117 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 FABP1P07148 127 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 SAA2P0DJI9 122 aaPredicted RBP13.19□□□□□ -0.3
SHQ1-202ENST00000444040 NPPCP23582 126 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 ABHD12Q8N2K0 398 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 OR4S2Q8NH73 311 aa13.19□□□□□ -0.3
SHQ1-202ENST00000444040 PYGO2Q9BRQ0 406 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms