RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 RAB13P51153 203 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 SUPT4H1P63272 117 aaKnown RBP9.73□□□□□ -0.85
PTPRF-208ENST00000437607 ZNF816Q0VGE8 651 aaPredicted RBP9.73□□□□□ -0.85
PTPRF-208ENST00000437607 EIF4EBP1Q13541 118 aaPredicted RBP9.73□□□□□ -0.85
PTPRF-208ENST00000437607 KPRPQ5T749 579 aaPredicted RBP9.73□□□□□ -0.85
PTPRF-208ENST00000437607 SPAG16Q8N0X2 631 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 LGI3Q8N145 548 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 OR8H3Q8N146 312 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 C12orf45Q8N5I9 185 aaPredicted RBP9.73□□□□□ -0.85
PTPRF-208ENST00000437607 DRAXINQ8NBI3 349 aaPredicted RBP9.73□□□□□ -0.85
PTPRF-208ENST00000437607 OR4S2Q8NH73 311 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 RNASE11Q8TAA1 199 aaKnown RBP9.73□□□□□ -0.85
PTPRF-208ENST00000437607 CD300LFQ8TDQ1 290 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 C17orf50Q8WW18 174 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 TP53RKQ96S44 253 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 ZNF251Q9BRH9 671 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 MED28Q9H204 178 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 SLC35D1Q9NTN3 355 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 SIGLEC9Q9Y336 463 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 RYR3Q15413 4870 aa9.73□□□□□ -0.85
PTPRF-208ENST00000437607 A0A1B0GVG6 124 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 LINC00473A8K010 186 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 OOSP1A8MZH6 123 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 FCGR3BO75015 233 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 PRB2P02812 416 aaPredicted RBP9.72□□□□□ -0.85
PTPRF-208ENST00000437607 RRASP10301 218 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 UCP1P25874 307 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 AKR1C2P52895 323 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 RPL30P62888 115 aaKnown RBP9.72□□□□□ -0.85
PTPRF-208ENST00000437607 TAGLNQ01995 201 aaKnown RBP9.72□□□□□ -0.85
PTPRF-208ENST00000437607 TMEM187Q14656 261 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 SP6Q3SY56 376 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 SAMD5Q5TGI4 173 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 LIAT1Q6ZQX7 453 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 LHFPL4Q7Z7J7 247 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 ZNF695Q8IW36 515 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 UXS1Q8NBZ7 420 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 MITD1Q8WV92 249 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 ST6GALNAC6Q969X2 333 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 AJUBAQ96IF1 538 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 TMEM222Q9H0R3 208 aa9.72□□□□□ -0.85
PTPRF-208ENST00000437607 FAM212BQ9NTI7 297 aaPredicted RBP9.72□□□□□ -0.85
PTPRF-208ENST00000437607 A0A0B4J2A0 478 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 IGHV1-3A0A0C4DH29 117 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 H7C2Y5 167 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 RBFOX2O43251 390 aaKnown RBP eCLIP9.71□□□□□ -0.86
PTPRF-208ENST00000437607 ATG12O94817 140 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 RPA2P15927 270 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 ERVK-16P61578 105 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 RRAS2P62070 204 aaPredicted RBP9.71□□□□□ -0.86
PTPRF-208ENST00000437607 ANKRD55Q3KP44 614 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 TMEM268Q5VZI3 342 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 LIN54Q6MZP7 749 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 MOB3BQ86TA1 216 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 PDPNQ86YL7 162 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 ZNF383Q8NA42 475 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 OR5R1Q8NH85 324 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 CFHR4Q92496 578 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 RBPMSQ93062 196 aaKnown RBP9.71□□□□□ -0.86
PTPRF-208ENST00000437607 IL22RA2Q969J5 263 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 NABP2Q9BQ15 211 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 PRR13Q9NZ81 148 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 COMMD9Q9P000 198 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 SHPKQ9UHJ6 478 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 WASHC3Q9Y3C0 194 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 HILPDAQ9Y5L2 63 aa9.71□□□□□ -0.86
PTPRF-208ENST00000437607 DUXBA0A1W2PPF3 345 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 A0A1W2PPI3 338 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 BTBD17A6NE02 478 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 H0YJW9 148 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 H3BUX3 64 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 GOSR2O14653 212 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 PROP1O75360 226 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 S1PR2O95136 353 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 CRYZL1O95825 349 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 OPN1MWP04001 364 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 CT45A6P0DMU7 189 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 CT45A5P0DMU8 189 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 CT45A7P0DMV0 189 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 OPN1MW2P0DN77 364 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 OPN1MW3P0DN78 364 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 PAX6P26367 422 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 BCAP31P51572 246 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 DIAPH2-AS1Q14236 149 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 GLYATL2Q8WU03 294 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 DDB2Q92466 427 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 MGAT4CQ9UBM8 478 aa9.7□□□□□ -0.86
PTPRF-208ENST00000437607 IGHV3-72A0A0B4J1Y9 119 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 LY6LH3BQJ8 138 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 RAMP3O60896 148 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 HPRT1P00492 218 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 IFNA21P01568 189 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 TRAPPC2P0DI81 140 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 TRAPPC2BP0DI82 140 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 MC5RP33032 325 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 LPAR6P43657 344 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 SSX2Q16385 188 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 LY6EQ16553 131 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 CADM3Q8N126 398 aa9.69□□□□□ -0.86
PTPRF-208ENST00000437607 SLC35G3Q8N808 338 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms