RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 AQP7O14520 342 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 IFNA4P05014 189 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 SOD3P08294 240 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 OR9G9P0C7N8 305 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 SLC25A6P12236 298 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 AGAP20933 346 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 CD24P25063 80 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 ZNF146Q15072 292 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 GUSBP1Q15486 140 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 CDSNQ15517 529 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 HMGN3Q15651 99 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 STX12Q86Y82 276 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 FAM90A1Q86YD7 464 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 DOLPP1Q86YN1 238 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 ZNF251Q9BRH9 671 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 Q9UFV3 132 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 SLC25A15Q9Y619 301 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 CCDC168Q8NDH2 2452 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 A0A1B0GU03 582 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 UBE2CO00762 179 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 ACTL6BO94805 426 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 IFNA10P01566 189 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 IGKV1D-33P01593 117 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 IGKV1-33P01594 117 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 S100A2P29034 98 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 GPR12P47775 334 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 KLF3P57682 345 aaPredicted RBP6.95□□□□□ -1.3
CD44-208ENST00000428726 TNFAIP6P98066 277 aaPredicted RBP6.95□□□□□ -1.3
CD44-208ENST00000428726 H2BFWTQ7Z2G1 175 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 C1orf162Q8NEQ5 155 aaPredicted RBP6.95□□□□□ -1.3
CD44-208ENST00000428726 SCGB1C1Q8TD33 95 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 PBDC1Q9BVG4 233 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 CXXC4Q9H2H0 198 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 RAXQ9Y2V3 346 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 NOTCH3Q9UM47 2321 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 CCKARP32238 428 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 BSPH1Q075Z2 132 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 GAMTQ14353 236 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 LYPD2Q6UXB3 125 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 KIR3DL3Q8N743 410 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 TUBA4BQ9H853 241 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 TUBG2Q9NRH3 451 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 RNF115Q9Y4L5 304 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 USP9XQ93008 2570 aaPredicted RBP6.94□□□□□ -1.3
CD44-208ENST00000428726 DYSFO75923 2080 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 CREBBPQ92793 2442 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 IFNA5P01569 189 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 COX5AP20674 150 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 SPSB3Q6PJ21 355 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 LFNGQ8NES3 379 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 COL25A1Q9BXS0 654 aaPredicted RBP6.94□□□□□ -1.3
CD44-208ENST00000428726 UNKLQ9H9P5 680 aaKnown RBP6.94□□□□□ -1.3
CD44-208ENST00000428726 PLSCR4Q9NRQ2 329 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 MBNL3Q9NUK0 354 aaKnown RBP6.94□□□□□ -1.3
CD44-208ENST00000428726 SONP18583 2426 aaKnown RBP6.94□□□□□ -1.3
CD44-208ENST00000428726 PTPRBP23467 1997 aa6.94□□□□□ -1.3
CD44-208ENST00000428726 A0A1B0GV90 55 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 ZNF705GA8MUZ8 300 aaPredicted RBP6.93□□□□□ -1.3
CD44-208ENST00000428726 HIST1H2BKO60814 126 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 CGAP01215 116 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 HIST1H2BJP06899 126 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 OR4A8P0C604 315 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 CD33P20138 364 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 HIST1H2BOP23527 126 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 HIST1H2BBP33778 126 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 HIST1H2BDP58876 126 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 HIST1H2BCP62807 126 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 SLC38A11Q08AI6 406 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 LY6DQ14210 128 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 ADIRFQ15847 76 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 ZNF726P1Q15940 193 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 HIST2H2BEQ16778 126 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.93□□□□□ -1.3
CD44-208ENST00000428726 CYB5R2Q6BCY4 276 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 SPACA3Q8IXA5 215 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 LINC00469Q8N7U9 141 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 OR51G1Q8NGK1 321 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 FRZBQ92765 325 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 HIST1H2BHQ93079 126 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 LSM10Q969L4 123 aaKnown RBP6.93□□□□□ -1.3
CD44-208ENST00000428726 HIST1H2BNQ99877 126 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 HIST1H2BMQ99879 126 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 NIPSNAP3BQ9BS92 247 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 GAB2Q9UQC2 676 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 NOTCH2Q04721 2471 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 K7N7A8 449 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 PHOX2AO14813 284 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 IGKV1-16P04430 117 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 REG1AP05451 166 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 CD200P41217 278 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 ELOBQ15370 118 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 SMIM21Q3B7S5 101 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 C10orf55Q5SWW7 151 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 GNPNAT1Q96EK6 184 aaPredicted RBP6.93□□□□□ -1.3
CD44-208ENST00000428726 RAB40CQ96S21 281 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 HES4Q9HCC6 221 aa6.93□□□□□ -1.3
CD44-208ENST00000428726 HEYLQ9NQ87 328 aaPredicted RBP6.93□□□□□ -1.3
CD44-208ENST00000428726 LIN7CQ9NUP9 197 aaKnown RBP6.93□□□□□ -1.3
CD44-208ENST00000428726 ZMAT5Q9UDW3 170 aaKnown RBP6.93□□□□□ -1.3
CD44-208ENST00000428726 A0A1B0GUS0 222 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms