RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 LINC00469Q8N7U9 141 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 BEX4Q9NWD9 120 aaPredicted RBP12.41□□□□□ -0.42
PTPRU-204ENST00000428026 ATP1A1-AS1Q5TC04 95 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 SPSB4Q96A44 273 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 KCNS1Q96KK3 526 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 DNAJC4Q9NNZ3 241 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 RPRMQ9NS64 109 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 CDX4O14627 284 aaPredicted RBP12.41□□□□□ -0.42
PTPRU-204ENST00000428026 LPAR2Q9HBW0 351 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 DLL3Q9NYJ7 618 aa12.41□□□□□ -0.42
PTPRU-204ENST00000428026 PRF1P14222 555 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 TFPI2P48307 235 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 SLC25A47Q6Q0C1 308 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 SLC17A3O00476 420 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 LINC01590Q5TEZ4 76 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 INO80CQ6PI98 192 aaPredicted RBP12.4□□□□□ -0.42
PTPRU-204ENST00000428026 ASCL5Q7RTU5 278 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 HILPDAQ9Y5L2 63 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 RNASE1P07998 156 aaKnown RBP12.4□□□□□ -0.42
PTPRU-204ENST00000428026 SFTPCP11686 197 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 MBNL2Q5VZF2 373 aaKnown RBP12.4□□□□□ -0.42
PTPRU-204ENST00000428026 OR10AG1Q8NH19 301 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 C17orf51A8MQB3 221 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 RRHO14718 337 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 FGF5P12034 268 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 ID1P41134 155 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 TMEM78Q5T7P6 136 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 DYNLRB2Q8TF09 96 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 MAP1LC3AQ9H492 121 aa12.4□□□□□ -0.42
PTPRU-204ENST00000428026 MARCH11A6NNE9 402 aa12.4□□□□□ -0.43
PTPRU-204ENST00000428026 REG1AP05451 166 aa12.4□□□□□ -0.43
PTPRU-204ENST00000428026 Q5PR19 223 aa12.4□□□□□ -0.43
PTPRU-204ENST00000428026 Q96M66 194 aa12.4□□□□□ -0.43
PTPRU-204ENST00000428026 PRR33A8MZF0 331 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 CCL21O00585 134 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 RAMP1O60894 148 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 KCNMB1Q16558 191 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 CENPWQ5EE01 88 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 SCN5AQ14524 2016 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 MGST3O14880 152 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 C8orf88P0DMB2 117 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 TM4SF20Q53R12 229 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 ZNF430Q9H8G1 570 aaPredicted RBP12.39□□□□□ -0.43
PTPRU-204ENST00000428026 KCNMB2Q9Y691 235 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 A0A1B0GV72 72 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 MPV17P39210 176 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 SRSF3P84103 164 aaKnown RBP12.39□□□□□ -0.43
PTPRU-204ENST00000428026 C19orf54Q5BKX5 351 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 SLC25A53Q5H9E4 307 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 RCC1LQ96I51 464 aaKnown RBP12.39□□□□□ -0.43
PTPRU-204ENST00000428026 SPSB2Q99619 263 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 TBL2Q9Y4P3 447 aaKnown RBP12.39□□□□□ -0.43
PTPRU-204ENST00000428026 IGKV1D-42A0A075B6H8 117 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 CTSBP07858 339 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 FCGR2BP31994 310 aaPredicted RBP12.39□□□□□ -0.43
PTPRU-204ENST00000428026 RPL8P62917 257 aaKnown RBP12.39□□□□□ -0.43
PTPRU-204ENST00000428026 PRSS8Q16651 343 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 AMMECR1LQ6DCA0 310 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 WNT5BQ9H1J7 359 aa12.39□□□□□ -0.43
PTPRU-204ENST00000428026 NPIPB7O75200 414 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 UCP2P55851 309 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 ZNF714Q96N38 554 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 TTTY12Q9BZ98 90 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 PILRAQ9UKJ1 303 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 TMEM14DPA8MWL7 114 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 OR4D5Q8NGN0 318 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 OR4A5Q8NH83 315 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 FAM131CQ96AQ9 280 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 UBTD1Q9HAC8 227 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 ICE1Q9Y2F5 2266 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 ZXDCQ2QGD7 858 aaPredicted RBP12.38□□□□□ -0.43
PTPRU-204ENST00000428026 PEF1Q9UBV8 284 aaKnown RBP12.38□□□□□ -0.43
PTPRU-204ENST00000428026 CCDC88CQ9P219 2028 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 PPIAL4EA0A075B759 164 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 PPIAL4DF5H284 164 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 PPIAL4FP0DN26 164 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 PPIAL4AQ9Y536 164 aa12.38□□□□□ -0.43
PTPRU-204ENST00000428026 RNF222A6NCQ9 220 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 TMEM229AB2RXF0 380 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 TBX6O95947 436 aaPredicted RBP12.37□□□□□ -0.43
PTPRU-204ENST00000428026 SELENOTP62341 195 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 ZCCHC14Q8WYQ9 949 aaKnown RBP12.37□□□□□ -0.43
PTPRU-204ENST00000428026 ZNF729A6NN14 1252 aaPredicted RBP12.37□□□□□ -0.43
PTPRU-204ENST00000428026 RAXQ9Y2V3 346 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 SLC25A17O43808 307 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 SRP19P09132 144 aaKnown RBP12.37□□□□□ -0.43
PTPRU-204ENST00000428026 GCHFRP30047 84 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 C16orf92Q96LL3 132 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 C18orf15Q96N68 181 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 TRAV8-6A0A0B4J262 113 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 A1L4Q6 167 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 SMIM13P0DJ93 91 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 LOXL3P58215 753 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 FAM19A2Q8N3H0 131 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 STPG3Q8N7X2 389 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 MARS2Q96GW9 593 aaKnown RBP12.37□□□□□ -0.43
PTPRU-204ENST00000428026 NABP2Q9BQ15 211 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 TRAV14DV4A0A0A6YYC5 116 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 A0A0G2JK05 382 aa12.37□□□□□ -0.43
PTPRU-204ENST00000428026 RBFOX2O43251 390 aaKnown RBP eCLIP12.37□□□□□ -0.435e-7■■■■■ 40.8
Retrieved 100 of 20,778 RNA–protein pairs in 133.7 ms