RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 GUK1Q16774 197 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 ACSBG2Q5FVE4 666 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 LCE1CQ5T751 118 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 LCE1BQ5T7P3 118 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 TMEM215Q68D42 235 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 PRSS54Q6PEW0 395 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 TMEM144Q7Z5S9 345 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 CALHM3Q86XJ0 350 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 OR6V1Q8N148 313 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 UBL4BQ8N7F7 174 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 YIPF7Q8N8F6 280 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 OR2V1Q8NHB1 315 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 PHOSPHO2Q8TCD6 241 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 Q8WTZ3 238 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 MAL2Q969L2 176 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 ACY3Q96HD9 319 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 ABHD14BQ96IU4 210 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 GTSF1LQ9H1H1 148 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 MED28Q9H204 178 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 FAM96AQ9H5X1 160 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 UBQLN4Q9NRR5 601 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 FLT4P35916 1363 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 SCN1AP35498 2009 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 TULP4Q9NRJ4 1543 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 ANKRD12Q6UB98 2062 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 GLI2P10070 1586 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 UHRF1BP1LA0JNW5 1464 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 IZUMO1RA6ND01 250 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 C4orf51C9J302 202 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 OR7C2O60412 319 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 FADS1O60427 444 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 STK16O75716 305 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 ZNF189O75820 626 aaPredicted RBP2.16□□□□□ -2.06
USP40-204ENST00000427947 GYPCP04921 128 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 OR5AC1P0C628 307 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 CD79AP11912 226 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 CTLA4P16410 223 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 NTF3P20783 257 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 PRPS1L1P21108 318 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 DDTP30046 118 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 MAGEA12P43365 314 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 B2MP61769 119 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 HERVK_113P63121 156 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 FABP5Q01469 135 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 EBPQ15125 230 aaKnown RBP2.16□□□□□ -2.06
USP40-204ENST00000427947 SLC9A3R2Q15599 337 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 SNCBQ16143 134 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 SP6Q3SY56 376 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 FAM78BQ5VT40 261 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 SFXN4Q6P4A7 337 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 Q6ZRU5 148 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 DAZ4Q86SG3 579 aaKnown RBP2.16□□□□□ -2.06
USP40-204ENST00000427947 AMN1Q8IY45 258 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 ZNF567Q8N184 647 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 MIR7-3HGQ8N6C7 128 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 FER1L6-AS1Q8NA97 138 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 OR8A1Q8NGG7 326 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 OR52N1Q8NH53 320 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 OR51H1Q8NH63 302 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 AP3S1Q92572 193 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 DCUN1D1Q96GG9 259 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 SLC35G5Q96KT7 338 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 OR2V2Q96R30 315 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 TRIB3Q96RU7 358 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 PEBP4Q96S96 227 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 SHANK2-AS3Q9BTD1 123 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 GABARAPL1Q9H0R8 117 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 OR51I2Q9H344 312 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 C11orf49Q9H6J7 331 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 HES4Q9HCC6 221 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 MRPL40Q9NQ50 206 aaKnown RBP2.16□□□□□ -2.06
USP40-204ENST00000427947 DAZ1Q9NQZ3 744 aaKnown RBP2.16□□□□□ -2.06
USP40-204ENST00000427947 ZNF230Q9UIE0 474 aaPredicted RBP2.16□□□□□ -2.06
USP40-204ENST00000427947 FBXO5Q9UKT4 447 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 PKIGQ9Y2B9 76 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 ZNF337Q9Y3M9 751 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 PCYT1BQ9Y5K3 369 aaPredicted RBP2.16□□□□□ -2.06
USP40-204ENST00000427947 VPS13CQ709C8 3753 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 CD109Q6YHK3 1445 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 ADGRG4Q8IZF6 3080 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 ZBED9Q6R2W3 1325 aa2.16□□□□□ -2.06
USP40-204ENST00000427947 ATP10BO94823 1461 aa2.15□□□□□ -2.06
USP40-204ENST00000427947 SIGLEC1Q9BZZ2 1709 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 A6NED7 52 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 OR5H14A6NHG9 310 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 LEUTXA8MZ59 168 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 J3QKU1 62 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 CHP2O43745 196 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 DEDDO75618 318 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 GUSBP08236 651 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 FAM228BP0C875 321 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 RNASE2P10153 161 aaKnown RBP2.15□□□□□ -2.07
USP40-204ENST00000427947 HSPA9P38646 679 aaKnown RBP2.15□□□□□ -2.07
USP40-204ENST00000427947 TMEM33P57088 247 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 IFITM2Q01629 132 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 EMX1Q04741 257 aaPredicted RBP2.15□□□□□ -2.07
USP40-204ENST00000427947 IHHQ14623 411 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 BAP18Q8IXM2 172 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 TMEM105Q8N8V8 129 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 OR1L8Q8NGR8 309 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms