RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 A0A1B0GU03 582 aa13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 SMLR1H3BR10 107 aa13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 BOLA2-SMG1P6H3BVE0 249 aa13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 IGKV1-5P01602 117 aa13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 SLC25A6P12236 298 aa13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 SAA4P35542 130 aa13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 BRWD1-AS2P59051 145 aa13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 RPS16P62249 146 aaKnown RBP13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 SRSF4Q08170 494 aaKnown RBP13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 GPR146Q96CH1 333 aa13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 MALSU1Q96EH3 234 aa13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 MAP1AP78559 2803 aaPredicted RBP13.85□□□□□ -0.19
CCDC28B-202ENST00000421922 A0A1W2PPI3 338 aa13.84□□□□□ -0.19
CCDC28B-202ENST00000421922 WRBO00258 174 aa13.84□□□□□ -0.19
CCDC28B-202ENST00000421922 C1QBP02746 253 aa13.84□□□□□ -0.19
CCDC28B-202ENST00000421922 EIF2B2P49770 351 aaKnown RBP13.84□□□□□ -0.19
CCDC28B-202ENST00000421922 THAP6Q8TBB0 222 aa13.84□□□□□ -0.19
CCDC28B-202ENST00000421922 PPP1R1CQ8WVI7 109 aa13.84□□□□□ -0.19
CCDC28B-202ENST00000421922 MS4A7Q9GZW8 240 aaPredicted RBP13.84□□□□□ -0.19
CCDC28B-202ENST00000421922 CACNG5Q9UF02 275 aa13.84□□□□□ -0.19
CCDC28B-202ENST00000421922 TIMM23O14925 209 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 RLN2P04090 185 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 IGKV1-16P04430 117 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 PSMB6P28072 239 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 VMA21Q3ZAQ7 101 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 TMEM177Q53S58 311 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 FOXRED2Q8IWF2 684 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 OR4A16Q8NH70 328 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 RHOVQ96L33 236 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 TMEM140Q9NV12 185 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 FAM96BQ9Y3D0 163 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 LSM5Q9Y4Y9 91 aaKnown RBP13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 AKAP9Q99996 3911 aa13.83□□□□□ -0.2
CCDC28B-202ENST00000421922 FXYD6-FXYD2A0A087WZ82 144 aa13.82□□□□□ -0.2
CCDC28B-202ENST00000421922 A0A0G2JRQ6 117 aa13.82□□□□□ -0.2
CCDC28B-202ENST00000421922 SNAPC5O75971 98 aa13.82□□□□□ -0.2
CCDC28B-202ENST00000421922 CD1BP29016 333 aa13.82□□□□□ -0.2
CCDC28B-202ENST00000421922 BRS3P32247 399 aa13.82□□□□□ -0.2
CCDC28B-202ENST00000421922 NKX2-1P43699 371 aaPredicted RBP13.82□□□□□ -0.2
CCDC28B-202ENST00000421922 HES1Q14469 280 aa13.82□□□□□ -0.2
CCDC28B-202ENST00000421922 RUSC1-AS1Q66K80 236 aa13.82□□□□□ -0.2
CCDC28B-202ENST00000421922 VSTM2AQ8TAG5 236 aa13.82□□□□□ -0.2
CCDC28B-202ENST00000421922 HYLS1Q96M11 299 aa13.82□□□□□ -0.2
CCDC28B-202ENST00000421922 TSNAXQ99598 290 aaKnown RBP13.82□□□□□ -0.2
CCDC28B-202ENST00000421922 FAM90A9PA6NNJ1 464 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 RAB32Q13637 225 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 IZUMO4Q1ZYL8 232 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 LDLRAD2Q5SZI1 272 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 BRD3OSQ6XYD6 125 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 NOXA1Q86UR1 476 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 VKORC1L1Q8N0U8 176 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 TEX29Q8N6K0 151 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 WDR89Q96FK6 387 aaPredicted RBP13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 ST8SIA3O43173 380 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 MPC2O95563 127 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 IGHV4-38-2P0DP08 117 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 PVALBP20472 110 aaPredicted RBP13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 LGALS7P47929 136 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 POU2AF1Q16633 256 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 OR4D5Q8NGN0 318 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 COA4Q9NYJ1 87 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 CACFD1Q9UGQ2 172 aa13.81□□□□□ -0.2
CCDC28B-202ENST00000421922 NF1P21359 2839 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 MTORP42345 2549 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 NXPH3O95157 252 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 VENTXO95231 258 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 NUP62P37198 522 aaPredicted RBP13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 BPIFB3P59826 476 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 OR4A47Q6IF82 309 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 C11orf87Q6NUJ2 197 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 CIARTQ8N365 385 aaPredicted RBP13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 PIP4P2Q8N4L2 257 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 OR2T10Q8NGZ9 312 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 NANPQ8TBE9 248 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 DCUN1D4Q92564 292 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 RNF5Q99942 180 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 MBD2Q9UBB5 411 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 POMT1Q9Y6A1 747 aa13.8□□□□□ -0.2
CCDC28B-202ENST00000421922 L7N2F9 121 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 MED6O75586 246 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 MOSP00540 346 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 IGKV1D-33P01593 117 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 IGKV1-33P01594 117 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 MBPP02686 304 aaPredicted RBP13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 P0C879 139 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 SAA1P0DJI8 122 aaPredicted RBP13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 OR2B8PP59922 312 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 VAMP2P63027 116 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 PLGLAQ15195 96 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 C17orf50Q8WW18 174 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 CFHR4Q92496 578 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 CLCC1Q96S66 551 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 KIAA1456Q9P272 454 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 NUP50Q9UKX7 468 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 PRNDQ9UKY0 176 aa13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 RCL1Q9Y2P8 373 aaKnown RBP13.79□□□□□ -0.2
CCDC28B-202ENST00000421922 ABCA1O95477 2261 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 FAM90A26D6RGX4 464 aa13.78□□□□□ -0.2
CCDC28B-202ENST00000421922 K7EPK0 472 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms