RNA–Protein interactions for RNA: ENST00000406454.7

CACNA1C-222, Transcript of calcium voltage-gated channel subunit alpha1 C, human

APPRIS ALT2 TSL 5 BASIC

Gene CACNA1C, Length 7,590 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1C-222	ENST00000406454	ATG2B	Q96BY7	2078 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	MEGF10	Q96KG7	1140 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454		A8MWL6	223 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	GFRA1	P56159	465 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	NHLRC3	Q5JS37	347 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	FAM209A	Q5JX71	171 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	SH3BGRL3	Q9H299	93 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454		A0A1B0GTI1	187 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	PGP	A6NDG6	321 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454		H7C2G1	150 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	RHBDL1	O75783	438 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	SIGLEC5	O15389	551 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	QTRT1	Q9BXR0	403 aa	Known RBP	11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	MRPS18C	Q9Y3D5	142 aa	Known RBP	11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454		B9A039	149 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454		M0R143	59 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ARF6	P62330	175 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	BPIFA4P	Q86YQ2	179 aa		11.32	□□□□□ -0.6
CACNA1C-222	ENST00000406454	COMP	P49747	757 aa	Predicted RBP	11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	RND3	P61587	244 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	IBA57	Q5T440	356 aa	Known RBP	11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ACP7	Q6ZNF0	438 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ZNF837	Q96EG3	531 aa	Predicted RBP	11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	DANCR	P0C864	163 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	SPANXN1	Q5VSR9	72 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ZNRF1	Q8ND25	227 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	C1orf162	Q8NEQ5	155 aa	Predicted RBP	11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	OR4C13	Q8NGP0	309 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	CLEC7A	Q9BXN2	247 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	CABIN1	Q9Y6J0	2220 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	TMEM189	A5PLL7	270 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	C12orf77	C9JDV5	145 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454		H0YL77	283 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ZP1	P60852	638 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	TMEM101	Q96IK0	257 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	LOC285556	D6RIA3	1793 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	MIA3	Q5JRA6	1907 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ABCA1	O95477	2261 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	PF4V1	P10720	104 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	FAM27E3	Q08E93	113 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ZNF273	Q14593	569 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	PCSK4	Q6UW60	755 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	SPOCK3	Q9BQ16	436 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ATXN7	O15265	892 aa	Predicted RBP	11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	MT-ND6	P03923	174 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ABLIM2	Q6H8Q1	611 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	RARRES2	Q99969	163 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	C8orf88	P0DMB2	117 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	IGFBP3	P17936	291 aa	Predicted RBP	11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	PPOX	P50336	477 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	TNFSF10	P50591	281 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	MUC15	Q8N387	334 aa		11.31	□□□□□ -0.6
CACNA1C-222	ENST00000406454	MFAP4	P55083	255 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	TMEM105	Q8N8V8	129 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ZNF383	Q8NA42	475 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	TMEM78	Q5T7P6	136 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	MRPL37	Q9BZE1	423 aa	Known RBP	11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	DNAJC4	Q9NNZ3	241 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	HSPB8	Q9UJY1	196 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	LOC105371242	A0A075B767	164 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454		A0A087X0M5	115 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454		A0A1B0GX30	115 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ZNF146	Q15072	292 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ACSF3	Q4G176	576 aa	Predicted RBP	11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	VKORC1L1	Q8N0U8	176 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	RAB37	Q96AX2	223 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	BRCA1	P38398	1863 aa	Known RBP	11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454		M0R3E3	92 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	TSPAN13	O95857	204 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	LIPF	P07098	398 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	CLDN18	P56856	261 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	HERVK_113	P61574	105 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	DMRTA2	Q96SC8	542 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	SLC25A33	Q9BSK2	321 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ID4	P47928	161 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	LINC01560	Q8TB33	94 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	REPIN1	Q9BWE0	567 aa	Known RBP	11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ARID2	Q68CP9	1835 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ZFC3H1	O60293	1989 aa	Known RBP	11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ZNF362	Q5T0B9	420 aa	Predicted RBP	11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	PNKD	Q8N490	385 aa		11.3	□□□□□ -0.6
CACNA1C-222	ENST00000406454	TRAV30	A0A087WSZ9	112 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	METTL26	Q96S19	204 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	PIMREG	Q9BSJ6	248 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	SLC35B1	P78383	322 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	ZNF343	Q6P1L6	599 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	EAF1	Q96JC9	268 aa	Predicted RBP	11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	IGLV3-32	A0A0A0MS00	114 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	CD81	P60033	236 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	RPL39P5	Q59GN2	51 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	FOXD3	Q9UJU5	478 aa	Predicted RBP	11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	CHD5	Q8TDI0	1954 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454		A0A1W2PS18	150 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	EIF3G	O75821	320 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	APOBEC3A	P31941	199 aa	Predicted RBP	11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	OR8A1	Q8NGG7	326 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	WDYHV1	Q96HA8	205 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	HSPB7	Q9UBY9	170 aa		11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	SRSF9	Q13242	221 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
CACNA1C-222	ENST00000406454	INTS1	Q8N201	2190 aa	Known RBP	11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms