RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PRB2P02812 416 aaPredicted RBP7.31□□□□□ -1.24
VPS53-203ENST00000401468 SNRNP70P08621 437 aaKnown RBP7.31□□□□□ -1.24
VPS53-203ENST00000401468 RRASP10301 218 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 INPP1P49441 399 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 LINC00205P59089 165 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 DHODHQ02127 395 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 SCGB2B2Q4G0G5 96 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 TMEM177Q53S58 311 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 KCTD9Q7L273 389 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 C16orf82Q7Z2V1 217 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 TMEM219Q86XT9 240 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 CMTM1Q8IZ96 169 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 DUSP18Q8NEJ0 188 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 OR8H1Q8NGG4 311 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 TMEM230Q96A57 120 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 GALNT14Q96FL9 552 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 EAF1Q96JC9 268 aaPredicted RBP7.31□□□□□ -1.24
VPS53-203ENST00000401468 RBM14Q96PK6 669 aaKnown RBP7.31□□□□□ -1.24
VPS53-203ENST00000401468 SCGB3A2Q96PL1 93 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 PLSCR3Q9NRY6 295 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 MCUBQ9NWR8 336 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 COPZ2Q9P299 210 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 PITPNC1Q9UKF7 332 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 VPREB3Q9UKI3 123 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 WASHC3Q9Y3C0 194 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 MPPED1O15442 326 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 CHST1O43916 411 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 B3GALNT1O75752 331 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 OR2F2O95006 317 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 NDUFA3O95167 84 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 MOSP00540 346 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 IGKV1D-33P01593 117 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 IGKV1-33P01594 117 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 IGKV1-16P04430 117 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 FAM106CPP0CH98 169 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 F2RP25116 425 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 KIR2DS2P43631 304 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 CCR6P51684 374 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 PIGPP57054 158 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 UBE2MP61081 183 aaKnown RBP7.3□□□□□ -1.24
VPS53-203ENST00000401468 POU2AF1Q16633 256 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 MOB3BQ86TA1 216 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 FAM71E2Q8N5Q1 922 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 DRAXINQ8NBI3 349 aaPredicted RBP7.3□□□□□ -1.24
VPS53-203ENST00000401468 NPBQ8NG41 125 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 OR4C13Q8NGP0 309 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 OR2T10Q8NGZ9 312 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 CITED1Q99966 193 aa7.3□□□□□ -1.24
VPS53-203ENST00000401468 NOTCH3Q9UM47 2321 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 CRYM-AS1A6NIL9 109 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 H0Y980 276 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 FGF16O43320 207 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 TNFSF12O43508 249 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 NDUFA7O95182 113 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 SPDEFO95238 335 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 IGLV2-23P01705 113 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 APOA2P02652 100 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 TCRBP04435 133 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 AMY1AP04745 511 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 RLN1P04808 185 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 IL6RP08887 468 aaPredicted RBP7.29□□□□□ -1.24
VPS53-203ENST00000401468 FGF2P09038 288 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 VSIG10L2P0DP72 767 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 LGALS7P47929 136 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 PROK1P58294 105 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 SUPT4H1P63272 117 aaKnown RBP7.29□□□□□ -1.24
VPS53-203ENST00000401468 CATR1Q13166 79 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 TMEM95Q3KNT9 176 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 ZNF585BQ52M93 769 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 MZT2BQ6NZ67 158 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 GLDNQ6ZMI3 551 aaPredicted RBP7.29□□□□□ -1.24
VPS53-203ENST00000401468 TBC1D26Q86UD7 250 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 SLC25A42Q86VD7 318 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 CCDC71LQ8N9Z2 235 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 OSR1Q8TAX0 266 aaPredicted RBP7.29□□□□□ -1.24
VPS53-203ENST00000401468 CD300LFQ8TDQ1 290 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 RITA1Q96K30 269 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 GPHA2Q96T91 129 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 ALX4Q9H161 411 aaPredicted RBP7.29□□□□□ -1.24
VPS53-203ENST00000401468 PLEKHA2Q9HB19 425 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 SLC35D1Q9NTN3 355 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 LIN7CQ9NUP9 197 aaKnown RBP7.29□□□□□ -1.24
VPS53-203ENST00000401468 COMMD9Q9P000 198 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 PRELID3BQ9Y3B1 194 aa7.29□□□□□ -1.24
VPS53-203ENST00000401468 IGHV3-72A0A0B4J1Y9 119 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 BTBD17A6NE02 478 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 M0QZK8 103 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 RAMP3O60896 148 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 PTTG1O95997 202 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 CRYGBP07316 175 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 PGAM2P15259 253 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 RPA2P15927 270 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 PI3P19957 117 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 CD24P25063 80 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 UCP1P25874 307 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 S100GP29377 79 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 DEFA1P59665 94 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 DEFA3P59666 94 aa7.28□□□□□ -1.24
VPS53-203ENST00000401468 DCTN2Q13561 401 aaKnown RBP7.28□□□□□ -1.24
VPS53-203ENST00000401468 MLANAQ16655 118 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms