RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 TMEM18Q96B42 140 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 GMPPAQ96IJ6 420 aaPredicted RBP10.56□□□□□ -0.72
SHMT1-205ENST00000395684 TRBV20OR9-2A0A075B6H5 130 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 A0A0U1RQK1 487 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 A0A1B0GUS0 222 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 ZNF320A2RRD8 509 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 C15orf65H3BRN8 121 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 OR4A8P0C604 315 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 CD46P15529 392 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 TMEM164Q5U3C3 297 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 TMPRSS7Q7RTY8 843 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 GBGT1Q8N5D6 347 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 RAB1CQ92928 201 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 LURAP1Q96LR2 239 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 C2orf88Q9BSF0 95 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 NDUFAF3Q9BU61 184 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 MSL2Q9HCI7 577 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 SPENQ96T58 3664 aaKnown RBP10.56□□□□□ -0.72
SHMT1-205ENST00000395684 A0A1W2PPV4 95 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 RRHO14718 337 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 CD99P14209 185 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 DUTP33316 252 aaKnown RBP10.55□□□□□ -0.72
SHMT1-205ENST00000395684 ARG2P78540 354 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 TMEM249Q2WGJ8 235 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 TREML4Q6UXN2 200 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 MRPL41Q8IXM3 137 aaKnown RBP10.55□□□□□ -0.72
SHMT1-205ENST00000395684 VKORC1L1Q8N0U8 176 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 Q8TCH9 128 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 TMEM204Q9BSN7 226 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 CXXC4Q9H2H0 198 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 KCNIP2Q9NS61 270 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 LOC400499M0QZD8 3231 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 FCGR3BO75015 233 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 TRIP6Q15654 476 aaKnown RBP10.55□□□□□ -0.72
SHMT1-205ENST00000395684 TMEM256Q8N2U0 113 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 CD177Q8N6Q3 437 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 WDR31Q8NA23 367 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 TRAPPC1Q9Y5R8 145 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 PXMP4Q9Y6I8 212 aa10.55□□□□□ -0.72
SHMT1-205ENST00000395684 DSPP15924 2871 aaKnown RBP10.54□□□□□ -0.72
SHMT1-205ENST00000395684 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.54□□□□□ -0.72
SHMT1-205ENST00000395684 C19orf67A6NJJ6 358 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 NUPR1O60356 82 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 COL8A2P25067 703 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 FOXL1Q12952 345 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 AARDQ4LEZ3 155 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 INO80CQ6PI98 192 aaPredicted RBP10.54□□□□□ -0.72
SHMT1-205ENST00000395684 SGMS2Q8NHU3 365 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 SDSLQ96GA7 329 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 ARRDC1-AS1Q9H2J1 176 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 ZDHHC11Q9H8X9 412 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 ZNF891A8MT65 544 aaPredicted RBP10.54□□□□□ -0.72
SHMT1-205ENST00000395684 TNFSF15O95150 251 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 ARL14EPLP0DKL9 152 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 FABP6P51161 128 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 PAX5Q02548 391 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 EDDM3AQ14507 147 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 BEND2Q8NDZ0 799 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 SFRP2Q96HF1 295 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 MGST2Q99735 147 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 FAM234AQ9H0X4 552 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 MS4A5Q9H3V2 200 aa10.54□□□□□ -0.72
SHMT1-205ENST00000395684 TRAV3A0A0B4J244 114 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 PRSS46E5RG02 174 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 IGKV3-15P01624 115 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 IGHV3-13P01766 116 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 IGHV3-7P01780 117 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 GCH1P30793 250 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 CCKARP32238 428 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 GPR12P47775 334 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 HTD2P86397 168 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 LBHQ53QV2 105 aaPredicted RBP10.53□□□□□ -0.72
SHMT1-205ENST00000395684 MIC13Q5XKP0 118 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 TCF23Q7RTU1 214 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 ABHD12Q8N2K0 398 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 ELOVL5Q9NYP7 299 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 PTPRBP23467 1997 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 LNP1A1A4G5 178 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 SPINT2O43291 252 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 TIMM8AO60220 97 aaPredicted RBP10.53□□□□□ -0.72
SHMT1-205ENST00000395684 HPRT1P00492 218 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 ZNF883P0CG24 379 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 STAG3L2P0CL84 134 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 STAG3L3P0CL85 134 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 SELLP14151 372 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 OPRK1P41145 380 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 VDAC2P45880 294 aaPredicted RBP10.53□□□□□ -0.72
SHMT1-205ENST00000395684 SPCS3P61009 180 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 USF2Q15853 346 aaPredicted RBP10.53□□□□□ -0.72
SHMT1-205ENST00000395684 PRAMEF5Q5TYX0 476 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 Q6ZT83 130 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 C1orf159Q96HA4 380 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 FER1L6-AS2Q96M78 137 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 IMMP2LQ96T52 175 aa10.53□□□□□ -0.72
SHMT1-205ENST00000395684 F6UZH7 168 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 AQP7O14520 342 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 GFRA3O60609 400 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 ADH4P08319 380 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 HNF1AP20823 631 aa10.52□□□□□ -0.72
SHMT1-205ENST00000395684 SOX8P57073 446 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms