RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 RAB11AP62491 216 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 SERF2P84101 59 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 SSX2Q16385 188 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 TET2Q6N021 2002 aaPredicted RBP11.05□□□□□ -0.64
CCDC3-202ENST00000378839 CUL9Q8IWT3 2517 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 A8MXE2 369 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 F2RL2O00254 374 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 GFRA3O60609 400 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 IGHV1-46P01743 117 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 Q8WTZ3 238 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 TMEM170AQ8WVE7 144 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 GVINP1Q7Z2Y8 2422 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 RP1L1Q8IWN7 2480 aaPredicted RBP11.05□□□□□ -0.64
CCDC3-202ENST00000378839 MAP1LC3B2A6NCE7 125 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 M0R1X1 148 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 MMP23AO75900 390 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 GPR61Q9BZJ8 451 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 MAP1LC3BQ9GZQ8 125 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 ZNRD1Q9P1U0 126 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 HCFC1P51610 2035 aa11.05□□□□□ -0.64
CCDC3-202ENST00000378839 PLCE1Q9P212 2302 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 AP4M1O00189 453 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 YPEL1O60688 119 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 GZMHP20718 246 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 ELOBQ15370 118 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 VWC2Q2TAL6 325 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 CT45A1Q5HYN5 189 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 ZCCHC24Q8N2G6 241 aaKnown RBP11.04□□□□□ -0.64
CCDC3-202ENST00000378839 DEFB108BQ8NET1 73 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 CT45A3Q8NHU0 189 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 YPEL2Q96QA6 119 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 SLC25A22Q9H936 323 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 DSCAML1Q8TD84 2053 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 SNRPCP09234 159 aaKnown RBP11.04□□□□□ -0.64
CCDC3-202ENST00000378839 FGF7P21781 194 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 CD81P60033 236 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 GCSAMLQ5JQS6 135 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 C1orf174Q8IYL3 243 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 FAM222BQ8WU58 562 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 DDB2Q92466 427 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 C14orf144Q96I85 54 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 CALYQ9NYX4 217 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 JPT1Q9UK76 154 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 PIEZO2Q9H5I5 2752 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 GATCO43716 136 aaKnown RBP11.04□□□□□ -0.64
CCDC3-202ENST00000378839 RBMXL2O75526 392 aaKnown RBP11.04□□□□□ -0.64
CCDC3-202ENST00000378839 OR10G4Q8NGN3 311 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 FAM57AQ8TBR7 257 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 MALSU1Q96EH3 234 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 TVP23CQ96ET8 276 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 TMEM147Q9BVK8 224 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 NPCDR1Q9BY65 106 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 OR6C3Q9NZP0 311 aa11.04□□□□□ -0.64
CCDC3-202ENST00000378839 TGIF2-C20orf24A0A0A6YYL0 155 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 ZNF729A6NN14 1252 aaPredicted RBP11.03□□□□□ -0.64
CCDC3-202ENST00000378839 CEBPZOSA8MTT3 80 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 FCN3O75636 299 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 IGHV2-5P01817 119 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 FABP4P15090 132 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 AARDQ4LEZ3 155 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 SPNS3Q6ZMD2 512 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 A0A0G2JNJ9 132 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 RRHO14718 337 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 PHOX2AO14813 284 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 CD40P25942 277 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 TRAT1Q6PIZ9 186 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 DOLPP1Q86YN1 238 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 FAM216BQ8N7L0 139 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 SNIP1Q8TAD8 396 aaKnown RBP11.03□□□□□ -0.64
CCDC3-202ENST00000378839 GAFA1Q96PS6 74 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 NIPSNAP3BQ9BS92 247 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 Q9UFV3 132 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 TIMM9Q9Y5J7 89 aa11.03□□□□□ -0.64
CCDC3-202ENST00000378839 MYOD1P15172 320 aa11.02□□□□□ -0.64
CCDC3-202ENST00000378839 GATA4P43694 442 aa11.02□□□□□ -0.64
CCDC3-202ENST00000378839 MZT1Q08AG7 82 aa11.02□□□□□ -0.64
CCDC3-202ENST00000378839 STUMQ69YW2 141 aa11.02□□□□□ -0.64
CCDC3-202ENST00000378839 OR10P1Q8NGE3 313 aa11.02□□□□□ -0.64
CCDC3-202ENST00000378839 C1orf159Q96HA4 380 aa11.02□□□□□ -0.64
CCDC3-202ENST00000378839 CCL13Q99616 98 aa11.02□□□□□ -0.64
CCDC3-202ENST00000378839 SFXN3Q9BWM7 321 aa11.02□□□□□ -0.64
CCDC3-202ENST00000378839 SEBOXQ9HB31 216 aaPredicted RBP11.02□□□□□ -0.64
CCDC3-202ENST00000378839 SPTBN2O15020 2390 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 A0A087WWC5 75 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 GYPAP02724 150 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 GNB2P62879 340 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 RELBQ01201 579 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 CLEC12BQ2HXU8 276 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 SLC35E3Q7Z769 313 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 TCTEX1D1Q8N7M0 179 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 Q8NA96 180 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 SAA2-SAA4A0A096LPE2 208 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 SAA2P0DJI9 122 aaPredicted RBP11.02□□□□□ -0.65
CCDC3-202ENST00000378839 TDGF1P3P51864 188 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 C3orf36Q3SXR2 165 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 FFAR4Q5NUL3 377 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 WDR25Q64LD2 544 aaPredicted RBP11.02□□□□□ -0.65
CCDC3-202ENST00000378839 TGIF2LXQ8IUE1 241 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 LHX4Q969G2 390 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 MISP3Q96FF7 219 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms