RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 PRRX1P54821 245 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 BRWD1-AS2P59051 145 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 ZNF816Q0VGE8 651 aaPredicted RBP7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 CT45A1Q5HYN5 189 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 SPSB3Q6PJ21 355 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 PDPNQ86YL7 162 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 ZNF295-AS1Q8N0V1 137 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 PNKDQ8N490 385 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 OR5AN1Q8NGI8 311 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 OR4C13Q8NGP0 309 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 OR9G1Q8NH87 305 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 CT45A3Q8NHU0 189 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 RFESDQ8TAC1 157 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 NEU4Q8WWR8 484 aaPredicted RBP7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 RHOVQ96L33 236 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 WFIKKN1Q96NZ8 548 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 OR4C12Q96R67 309 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 SPOCK3Q9BQ16 436 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 CTDSP1Q9GZU7 261 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 SH3BGRL3Q9H299 93 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 CHODLQ9H9P2 273 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 HEYLQ9NQ87 328 aaPredicted RBP7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 WDR83OSQ9Y284 106 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 ESPL1Q14674 2120 aa7.19□□□□□ -1.26
SNRNP40-202ENST00000373720 TRAV39A0A0B4J263 110 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 IGHV1-69-2A0A0G2JMI3 117 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 PMS2P5A8MQ11 134 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 SHISA9B4DS77 424 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 SEC14L6B5MCN3 397 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 BCL2P10415 239 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 USF1P22415 310 aaPredicted RBP7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 GPX4P36969 197 aaPredicted RBP7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 VDAC2P45880 294 aaPredicted RBP7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 TMEM177Q53S58 311 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 SSX9Q7RTT3 188 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 BOLLQ8N9W6 283 aaKnown RBP7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 CLDND2Q8NHS1 167 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 C8orf46Q8TAG6 207 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 MALSU1Q96EH3 234 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 TVP23CQ96ET8 276 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 RNF2Q99496 336 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 SRSF8Q9BRL6 282 aaKnown RBP7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 PARP12Q9H0J9 701 aaKnown RBP7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 RAB1BQ9H0U4 201 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 RPRMQ9NS64 109 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 TMEM140Q9NV12 185 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 MIOXQ9UGB7 285 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 AMMECR1Q9Y4X0 333 aaPredicted RBP7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 GVINP1Q7Z2Y8 2422 aa7.18□□□□□ -1.26
SNRNP40-202ENST00000373720 RIF1Q5UIP0 2472 aaKnown RBP7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 SAA2-SAA4A0A096LPE2 208 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 LOC102723971A0A1B0GUV8 181 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 PDE6DO43924 150 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 PROP1O75360 226 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 KBTBD11O94819 623 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 VENTXO95231 258 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 CYB5R3P00387 301 aaPredicted RBP7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 IFNA10P01566 189 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 SAA2P0DJI9 122 aaPredicted RBP7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 IAPPP10997 89 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 NDUFB7P17568 137 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 RAB5BP61020 215 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 CCL8P80075 99 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 ERHP84090 104 aaKnown RBP7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 PRCDQ00LT1 54 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 TMEM155Q4W5P6 130 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 C2orf83Q53S99 150 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 ETV3LQ6ZN32 361 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 C1orf122Q6ZSJ8 110 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 LYG1Q8N1E2 194 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 OR1L8Q8NGR8 309 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 BSCL2Q96G97 398 aaPredicted RBP7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 PLPPR2Q96GM1 343 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 TIMD4Q96H15 378 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 CCL13Q99616 98 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 NPCDR1Q9BY65 106 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 SLC35D1Q9NTN3 355 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 RALYQ9UKM9 306 aaKnown RBP7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 CFAP54Q96N23 3096 aa7.17□□□□□ -1.26
SNRNP40-202ENST00000373720 HEATR1Q9H583 2144 aaKnown RBP7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 WDFY4Q6ZS81 3184 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 IGHV3OR15-7A0A075B7D8 119 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 LOC105371267A0A1B0GV96 52 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 A0A1W2PPV4 95 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 C7orf77A4D0Y5 90 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 MAP1LC3B2A6NCE7 125 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 E7EQL1 145 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 UPK2O00526 184 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 CCL21O00585 134 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 AGPAT2O15120 278 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 SCO1O75880 301 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 GYPAP02724 150 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 SRP19P09132 144 aaKnown RBP7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 FBP1P09467 338 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 ATF4P18848 351 aaPredicted RBP7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 RPL29P47914 159 aaKnown RBP7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 ZNF134P52741 427 aa7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 TMEM267Q0VDI3 215 aaPredicted RBP7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 ZNF672Q499Z4 452 aaPredicted RBP7.16□□□□□ -1.26
SNRNP40-202ENST00000373720 AVPI1Q5T686 147 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms