RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 IFNA10P01566 189 aa11.85□□□□□ -0.51
CD48-201ENST00000368045 EGR1P18146 543 aa11.85□□□□□ -0.51
CD48-201ENST00000368045 RAB7AP51149 207 aa11.85□□□□□ -0.51
CD48-201ENST00000368045 HOXA4Q00056 320 aaPredicted RBP11.85□□□□□ -0.51
CD48-201ENST00000368045 SPINK9Q5DT21 86 aa11.85□□□□□ -0.51
CD48-201ENST00000368045 KCNIP4Q6PIL6 250 aa11.85□□□□□ -0.51
CD48-201ENST00000368045 GCSAMQ8N6F7 178 aa11.85□□□□□ -0.51
CD48-201ENST00000368045 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.85□□□□□ -0.51
CD48-201ENST00000368045 S1PR3Q99500 378 aa11.85□□□□□ -0.51
CD48-201ENST00000368045 DCTN5Q9BTE1 182 aa11.85□□□□□ -0.51
CD48-201ENST00000368045 A0A1W2PPV4 95 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 MBD3L4A6NDZ8 208 aaPredicted RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 MBD3L3A6NE82 208 aaPredicted RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 MBD3L5A6NJ08 208 aaPredicted RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 IGHV3-13P01766 116 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 FABP4P15090 132 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 LOXL3P58215 753 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 LCN2P80188 198 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 TLE1Q04724 770 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 C4orf17Q53FE4 359 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 OR2T10Q8NGZ9 312 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 MBD3L2Q8NHZ7 208 aaPredicted RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 TMEM170AQ8WVE7 144 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 PACRGQ96M98 296 aaPredicted RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 IMMP2LQ96T52 175 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 HIST1H2BLQ99880 126 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 OPN3Q9H1Y3 402 aaPredicted RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 CHODLQ9H9P2 273 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 HEYLQ9NQ87 328 aaPredicted RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 ZMAT5Q9UDW3 170 aaKnown RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 KNTC1P50748 2209 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 PRSS46E5RG02 174 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 GALR2O43603 387 aaPredicted RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 LINC00205P59089 165 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 RPS16P62249 146 aaKnown RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 RELBQ01201 579 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 CISD2Q8N5K1 135 aaKnown RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 OR1P1Q8NH06 330 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 OR4S2Q8NH73 311 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 OR5R1Q8NH85 324 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 RNASEH2CQ8TDP1 164 aaKnown RBP11.84□□□□□ -0.51
CD48-201ENST00000368045 IFI27L2Q9H2X8 130 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 ASCL3Q9NQ33 180 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 DKK4Q9UBT3 224 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 DUSP13Q9UII6 198 aa11.84□□□□□ -0.51
CD48-201ENST00000368045 DVL1O14640 695 aa11.83□□□□□ -0.52
CD48-201ENST00000368045 NPPCP23582 126 aa11.83□□□□□ -0.52
CD48-201ENST00000368045 LTC4SQ16873 150 aa11.83□□□□□ -0.52
CD48-201ENST00000368045 PDZD11Q5EBL8 140 aa11.83□□□□□ -0.52
CD48-201ENST00000368045 Q8TCH9 128 aa11.83□□□□□ -0.52
CD48-201ENST00000368045 DDB2Q92466 427 aa11.83□□□□□ -0.52
CD48-201ENST00000368045 MEGF10Q96KG7 1140 aa11.83□□□□□ -0.52
CD48-201ENST00000368045 PRDM13Q9H4Q3 707 aa11.83□□□□□ -0.52
CD48-201ENST00000368045 CALYQ9NYX4 217 aa11.83□□□□□ -0.52
CD48-201ENST00000368045 FRYLO94915 3013 aa11.83□□□□□ -0.52
CD48-201ENST00000368045 GFRA3O60609 400 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 CXorf1O96002 111 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 CGB3P0DN86 165 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 CGB7P0DN87 165 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 PDLIM4P50479 330 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 EDDM3BP56851 147 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 ACTL10Q5JWF8 245 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 TIMM23BQ5SRD1 257 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 TREML4Q6UXN2 200 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 NECAP1Q8NC96 275 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 ADTRPQ96IZ2 230 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 PCGF1Q9BSM1 259 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 TMEM140Q9NV12 185 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 TCF19Q9Y242 345 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 KIAA2026Q5HYC2 2103 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 CEACAM4O75871 244 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 LHBP01229 141 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 STAG3L2P0CL84 134 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 STAG3L3P0CL85 134 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 THBS3P49746 956 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 KLF3P57682 345 aaPredicted RBP11.82□□□□□ -0.52
CD48-201ENST00000368045 GNB1P62873 340 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 TMEM30BQ3MIR4 351 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 IGF2-ASQ6U949 168 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 LINC01551Q86U37 167 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 TMEM204Q9BSN7 226 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 GGTLC1Q9BX51 225 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 FOXA2Q9Y261 457 aaPredicted RBP11.82□□□□□ -0.52
CD48-201ENST00000368045 CACNA1GO43497 2377 aa11.82□□□□□ -0.52
CD48-201ENST00000368045 VPS13AQ96RL7 3174 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 TRAV38-1A0A0B4J264 116 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 XKRY2A2RUG3 117 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 C15orf61A6NNL5 157 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 FNDC10F2Z333 226 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 RRHO14718 337 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 GLRXP35754 106 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 GATA4P43694 442 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 PKIAP61925 76 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 RTP5Q14D33 572 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 RPL39P5Q59GN2 51 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 SSX9Q7RTT3 188 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 FAM222BQ8WU58 562 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 OR2V2Q96R30 315 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 MGST2Q99735 147 aa11.81□□□□□ -0.52
CD48-201ENST00000368045 ELOVL1Q9BW60 279 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms